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A3QBR0 (A3QBR0_SHELP) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 54. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
DNA mismatch repair protein MutH HAMAP-Rule MF_00759
Alternative name(s):
Methyl-directed mismatch repair protein HAMAP-Rule MF_00759
Gene names
Name:mutH HAMAP-Rule MF_00759
Ordered Locus Names:Shew_1037 EMBL ABO22908.1
OrganismShewanella loihica (strain ATCC BAA-1088 / PV-4) [Complete proteome] [HAMAP] EMBL ABO22908.1
Taxonomic identifier323850 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella

Protein attributes

Sequence length223 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Sequence-specific endonuclease that cleaves unmethylated GATC sequences. It is involved in DNA mismatch repair By similarity. HAMAP-Rule MF_00759 SAAS SAAS011337

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00759 SAAS SAAS011337.

Sequence similarities

Belongs to the MutH family. HAMAP-Rule MF_00759

Ontologies

Keywords
   Biological processDNA damage
DNA repair HAMAP-Rule MF_00759 SAAS SAAS011337
   Cellular componentCytoplasm HAMAP-Rule MF_00759 SAAS SAAS011337
   Molecular functionEndonuclease HAMAP-Rule MF_00759 SAAS SAAS011337
Hydrolase
Nuclease
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA modification

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionDNA binding

Inferred from electronic annotation. Source: InterPro

endonuclease activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A3QBR0 [UniParc].

Last modified April 17, 2007. Version 1.
Checksum: 7F348EEF3813400F

FASTA22325,238
        10         20         30         40         50         60 
MKSKILPPES LDELMQRAQE MAGLTLGQLA ELHHVAVPSN LKRDKGWIGQ LIELELGATA 

        70         80         90        100        110        120 
GSKPEQDFLH LGVELKTIPV DESGKPLETT YVTVAPLMNI NGLRWQESLV YHKLQRVLWI 

       130        140        150        160        170        180 
PVEGIRHKPI GERRIGSPIL WTPSEEEMAQ IRQDWEEIME LIALGKVEQI TARHGEVLQL 

       190        200        210        220 
RPKGANSRAL TQSIAQDGQV KLTNPRGFYL KIPFTQQILS RYF 

« Hide

References

[1]"Complete sequence of Shewanella loihica PV-4."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Kyrpides N., Mikhailova N., Romine M.F., Serres G., Fredrickson J., Tiedje J., Richardson P.
Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-1088 / PV-4.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000606 Genomic DNA. Translation: ABO22908.1.
RefSeqYP_001093167.1. NC_009092.1.

3D structure databases

ProteinModelPortalA3QBR0.
SMRA3QBR0. Positions 7-223.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING323850.Shew_1037.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABO22908; ABO22908; Shew_1037.
GeneID4920592.
KEGGslo:Shew_1037.
PATRIC23513847. VBISheLoi132094_1041.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3066.
HOGENOMHOG000271839.
KOK03573.
OMALRPKGAN.
OrthoDBEOG6CGCC0.
ProtClustDBPRK05070.

Enzyme and pathway databases

BioCycSLOI323850:GHQJ-1060-MONOMER.

Family and domain databases

Gene3D3.40.600.10. 1 hit.
HAMAPMF_00759. MutH.
InterProIPR004230. DNA_mismatch_repair_MutH.
IPR011337. DNA_rep_MutH/RE_typeII.
IPR011335. Restrct_endonuc-II-like.
[Graphical view]
PfamPF02976. MutH. 1 hit.
[Graphical view]
SMARTSM00927. MutH. 1 hit.
[Graphical view]
SUPFAMSSF52980. SSF52980. 1 hit.
TIGRFAMsTIGR02248. mutH_TIGR. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA3QBR0_SHELP
AccessionPrimary (citable) accession number: A3QBR0
Entry history
Integrated into UniProtKB/TrEMBL: April 17, 2007
Last sequence update: April 17, 2007
Last modified: April 16, 2014
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)