A3PRF6 (DADA_RHOS1) Reviewed, UniProtKB/Swiss-Prot
Last modified
December 14, 2011.
Version 32.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: D-amino acid dehydrogenase small subunit EC=1.4.99.1 | ||||
| Gene names |
| ||||
| Organism | Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) [Complete proteome] [HAMAP] | ||||
| Taxonomic identifier | 349101 [NCBI] | ||||
| Taxonomic lineage | Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Rhodobacter |
Protein attributes
| Sequence length | 436 AA. |
| Sequence status | Complete. |
| Protein existence | Inferred from homology |
General annotation (Comments)
| Function | Oxidative deamination of D-amino acids By similarity. HAMAP MF_01202 |
| Catalytic activity | A D-amino acid + H2O + acceptor = a 2-oxo acid + NH3 + reduced acceptor. HAMAP MF_01202 |
| Cofactor | FAD By similarity. HAMAP MF_01202 |
| Pathway | Amino-acid degradation; D-alanine degradation; NH(3) and pyruvate from D-alanine: step 1/1. HAMAP MF_01202 |
| Subunit structure | Heterodimer of a small and a large subunit By similarity. |
| Sequence similarities | Belongs to the DadA oxidoreductase family. |
Ontologies
| Keywords | |
|---|---|
| Ligand | FAD Flavoprotein |
| Molecular function | Oxidoreductase |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Molecular function | D-amino-acid dehydrogenase activity Inferred from electronic annotation. Source: EC |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||
Molecule processing | ||||||||
|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 436 | 436 | D-amino acid dehydrogenase small subunit HAMAP MF_01202 | PRO_1000066111 | ||||
Regions | ||||||||
| Nucleotide binding | 3 – 17 | 15 | FAD Potential | |||||
Sequences
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References
| [1] | "Complete sequence of chromosome 2 of Rhodobacter sphaeroides ATCC 17029." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. Kaplan S.Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 17029 / ATH 2.4.9. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | CP000578 Genomic DNA. Translation: ABN78922.1. |
| RefSeq | YP_001045694.1. NC_009050.1. |
3D structure databases | |
| ProteinModelPortal | A3PRF6. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | A3PRF6. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| GeneID | 4898108. |
| GenomeReviews | Gene locus Rsph17029_3842 in contig CP000578_GR. |
| KEGG | rsh:Rsph17029_3842. |
| PATRIC | 23175713. VBIRhoSph114483_4118. |
Organism-specific databases | |
| CMR | Search... |
Phylogenomic databases | |
| eggNOG | COG0665. |
| HOGENOM | HBG729204. |
| OMA | VDRQPAV. |
| ProtClustDB | PRK00711. |
Enzyme and pathway databases | |
| BioCyc | RSPH349101:RSPH17029_3842-MONOMER. |
Family and domain databases | |
| HAMAP | MF_01202. DadA. [Tree] |
| InterPro | IPR023080. D-aa_DH_ssu_DadA. IPR006076. FAD-dep_OxRdtase. [Graphical view] |
| KO | K00285. |
| Pfam | PF01266. DAO. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | DADA_RHOS1 | ||||||||
| Accession | Primary (citable) accession number: A3PRF6 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Prokaryotic Protein Annotation Program | ||||||||
Relevant documents
| PATHWAY comments Index of metabolic and biosynthesis pathways |
| SIMILARITY comments Index of protein domains and families |

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