A3PLD6 (A3PLD6_RHOS1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
RNA polymerase sigma factor RuleBase RU000715

Gene names

Ordered Locus Names:

Rsph17029_2049 EMBL ABN77152.1

Organism

Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) [Complete proteome] [HAMAP] EMBL ABN77152.1

Taxonomic identifier

349101 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Rhodobacter › Rhodobacter sphaeroides

Protein attributes

Sequence length	668 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity. RuleBase RU000715
Sequence similarities	Belongs to the sigma-70 factor family. RuleBase RU000715

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding RuleBase RU000715 SAAS SAAS007127
Molecular function	Sigma factor RuleBase RU000715 SAAS SAAS007127
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA-dependent transcription, initiation Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A3PLD6 [UniParc]. Last modified April 3, 2007. Version 1. Checksum: 81636850A02222A5	FASTA	668	75,724
	10 20 30 40 50 60 MAVKDTDDGK PEDQDAETSL DMSQAAVKRM IAEARERGYI TYDQLNTVLP QDQVSSEQIE 70 80 90 100 110 120 DVMAMLSEMG INVIENEEAE EGEPAGELVE QGSGSREIAV AGTQGETLDR TDDPVRMYLR 130 140 150 160 170 180 EMGSVELLSR EGEIAIAKRI EAGRNTMIAG LCESPLTFQA ITIWRDELLS EDILLRDVID 190 200 210 220 230 240 LEATFGRSLD GDGDDEIDGP EIDEVEVAAA PAPAPRRSTS SEPELDADGN PISRAEEEDE 250 260 270 280 290 300 DDEASAMSLA AMEAALKPRV LETLELIARD YGKLAEMQNR RMSATLNDHI RFTTEDEAAY 310 320 330 340 350 360 QKLRSEIVLL VNELHLHNNR IEALIDQLYG INRKIMSINS AMVKLADAAR INRREFIDEY 370 380 390 400 410 420 QGYELDPMWA ERMAAKSGRG WQTLMEKSRD RVEDLRGEMA QVGQYVGVDI SEFRRIVNQV 430 440 450 460 470 480 QKGEKEARQA KKEMVEANLR LVISIAKKYT NRGLQFLDLI QEGNIGLMKA VDKFEYRRGY 490 500 510 520 530 540 KFSTYATWWI RQAITRSIAD QARTIRIPVH MIETINKLVR TGRQMLHEIG REPTPEELAE 550 560 570 580 590 600 KLQMPLEKVR KVMKIAKEPI SLETPIGDEE DSQLGDFIED KNAILPLDSA IQENLKETTT 610 620 630 640 650 660 RVLASLTPRE ERVLRMRFGI GMNTDHTLEE VGQQFSVTRE RIRQIEAKAL RKLKHPSRSR KLRSFLDQ

References

[1]

"Complete sequence of chromosome 1 of Rhodobacter sphaeroides ATCC 17029." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Richardson P., Mackenzie C., Choudhary M., Donohue T.J., Kaplan S. Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 17029 / ATH 2.4.9.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000577 Genomic DNA. Translation: ABN77152.1.
RefSeq	YP_001043924.1. NC_009049.1.
3D structure databases
ProteinModelPortal	A3PLD6.
SMR	A3PLD6. Positions 425-667.
ModBase	Search...
Protein-protein interaction databases
STRING	349101.Rsph17029_2049.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABN77152; ABN77152; Rsph17029_2049.
GeneID	4897206.
KEGG	rsh:Rsph17029_2049.
PATRIC	23171912. VBIRhoSph114483_2253.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0568.
HOGENOM	HOG000270272.
KO	K03086.
OMA	YQGSELD.
ProtClustDB	PRK05658.
Enzyme and pathway databases
BioCyc	RSPH349101:GHC8-3192-MONOMER.
Family and domain databases
Gene3D	1.10.10.10. 2 hits.
InterPro	IPR014284. RNA_pol_sigma-70_dom. IPR000943. RNA_pol_sigma70. IPR009042. RNA_pol_sigma70_r1_2. IPR007627. RNA_pol_sigma70_r2. IPR007624. RNA_pol_sigma70_r3. IPR007630. RNA_pol_sigma70_r4. IPR007631. RNA_pol_sigma_70_non-ess. IPR007127. RNA_pol_sigma_70_r1_1. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR012760. RNA_pol_sigma_RpoD_C. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF04546. Sigma70_ner. 1 hit. PF03979. Sigma70_r1_1. 1 hit. PF00140. Sigma70_r1_2. 1 hit. PF04542. Sigma70_r2. 1 hit. PF04539. Sigma70_r3. 1 hit. PF04545. Sigma70_r4. 1 hit. [Graphical view]
PRINTS	PR00046. SIGMA70FCT.
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMs	TIGR02393. RpoD_Cterm. 1 hit. TIGR02937. sigma70-ECF. 1 hit.
PROSITE	PS00715. SIGMA70_1. 1 hit. PS00716. SIGMA70_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A3PLD6_RHOS1

Accession

Primary (citable) accession number: A3PLD6

Entry history

Integrated into UniProtKB/TrEMBL:	April 3, 2007
Last sequence update:	April 3, 2007
Last modified:	May 1, 2013
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)