A3PIM1 (A3PIM1_RHOS1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ABN76187.1

Gene names

Ordered Locus Names:

Rsph17029_1076 EMBL ABN76187.1

Organism

Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) [Complete proteome] [HAMAP] EMBL ABN76187.1

Taxonomic identifier

349101 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Rhodobacter › Rhodobacter sphaeroides

Protein attributes

Sequence length	533 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABN76187.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A3PIM1 [UniParc]. Last modified April 3, 2007. Version 1. Checksum: 2FF725E138390678	FASTA	533	58,974
	10 20 30 40 50 60 MKRFAALFDL LDRTTRTSAK VAALADYFRT APEEDRVWTI GLLSGRRPKR AVNTTELRSW 70 80 90 100 110 120 AAEASGLPVW LAEEVHPIVG DLAETISLLL PEPSQTSDRT LDGWMRELVS LTGRPAEVRR 130 140 150 160 170 180 AAILDAWDRL STPERFLFNK LITGGFRMGV SQGLMTRALA QATGVDEAVL AHRLMGDWKP 190 200 210 220 230 240 GRIGFETLIG AHDPEADASK PYPFALASPV EEVAALGDPA DWLAEWKWDG IRGQLVNRAG 250 260 270 280 290 300 AFALWSRGEE LVTDRFPDLA PLRDFLPPGL VIDAEVLAWG GDGPLPFAAL QKRIGRLTVP 310 320 330 340 350 360 KKILAEAPAH LLAYDLLEEN GEDLRAAPLA HRRARLEAVL AALPPGVPIS PSPLVAFDDW 370 380 390 400 410 420 ETLGGIRATA REKIAEGLML KRASSPYFVG RKRGDWWKWK LDPYTVDAVM LYAQQGAGRR 430 440 450 460 470 480 ATLFTDFTFG VRDGDDLVPF TKAYSGLTDA EFRQITDWVR KNTLERFGPV RRVPPELVFE 490 500 510 520 530 LAFEGIQASP RHKSGIALRF PRMVRWRKDK PAAEIDTLES LRELLAATGG AAP

References

[1]

"Complete sequence of chromosome 1 of Rhodobacter sphaeroides ATCC 17029." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Richardson P., Mackenzie C., Choudhary M., Donohue T.J., Kaplan S. Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 17029 / ATH 2.4.9.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000577 Genomic DNA. Translation: ABN76187.1.
RefSeq	YP_001042959.1. NC_009049.1.
3D structure databases
ProteinModelPortal	A3PIM1.
ModBase	Search...
Protein-protein interaction databases
STRING	349101.Rsph17029_1076.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABN76187; ABN76187; Rsph17029_1076.
GeneID	4897401.
KEGG	rsh:Rsph17029_1076.
PATRIC	23169880. VBIRhoSph114483_1251.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
ProtClustDB	PRK09247.
Enzyme and pathway databases
BioCyc	RSPH349101:GHC8-2220-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A3PIM1_RHOS1

Accession

Primary (citable) accession number: A3PIM1

Entry history

Integrated into UniProtKB/TrEMBL:	April 3, 2007
Last sequence update:	April 3, 2007
Last modified:	May 1, 2013
This is version 44 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)