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A3PIM1

- A3PIM1_RHOS1

UniProt

A3PIM1 - A3PIM1_RHOS1

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Protein
Submitted name: ATP dependent DNA ligase
Gene
Rsph17029_1076
Organism
Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRSPH349101:GHC8-1096-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Rsph17029_1076Imported
OrganismiRhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)Imported
Taxonomic identifieri349101 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRhodobacter
ProteomesiUP000002606: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi349101.Rsph17029_1076.

Structurei

3D structure databases

ProteinModelPortaliA3PIM1.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK01971.
OMAiKSASTHN.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A3PIM1-1 [UniParc]FASTAAdd to Basket

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MKRFAALFDL LDRTTRTSAK VAALADYFRT APEEDRVWTI GLLSGRRPKR    50
AVNTTELRSW AAEASGLPVW LAEEVHPIVG DLAETISLLL PEPSQTSDRT 100
LDGWMRELVS LTGRPAEVRR AAILDAWDRL STPERFLFNK LITGGFRMGV 150
SQGLMTRALA QATGVDEAVL AHRLMGDWKP GRIGFETLIG AHDPEADASK 200
PYPFALASPV EEVAALGDPA DWLAEWKWDG IRGQLVNRAG AFALWSRGEE 250
LVTDRFPDLA PLRDFLPPGL VIDAEVLAWG GDGPLPFAAL QKRIGRLTVP 300
KKILAEAPAH LLAYDLLEEN GEDLRAAPLA HRRARLEAVL AALPPGVPIS 350
PSPLVAFDDW ETLGGIRATA REKIAEGLML KRASSPYFVG RKRGDWWKWK 400
LDPYTVDAVM LYAQQGAGRR ATLFTDFTFG VRDGDDLVPF TKAYSGLTDA 450
EFRQITDWVR KNTLERFGPV RRVPPELVFE LAFEGIQASP RHKSGIALRF 500
PRMVRWRKDK PAAEIDTLES LRELLAATGG AAP 533
Length:533
Mass (Da):58,974
Last modified:April 3, 2007 - v1
Checksum:i2FF725E138390678
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000577 Genomic DNA. Translation: ABN76187.1.
RefSeqiYP_001042959.1. NC_009049.1.

Genome annotation databases

EnsemblBacteriaiABN76187; ABN76187; Rsph17029_1076.
GeneIDi4897401.
KEGGirsh:Rsph17029_1076.
PATRICi23169880. VBIRhoSph114483_1251.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000577 Genomic DNA. Translation: ABN76187.1 .
RefSeqi YP_001042959.1. NC_009049.1.

3D structure databases

ProteinModelPortali A3PIM1.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 349101.Rsph17029_1076.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABN76187 ; ABN76187 ; Rsph17029_1076 .
GeneIDi 4897401.
KEGGi rsh:Rsph17029_1076.
PATRICi 23169880. VBIRhoSph114483_1251.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000036007.
KOi K01971.
OMAi KSASTHN.
OrthoDBi EOG6Q8HXT.

Enzyme and pathway databases

BioCyci RSPH349101:GHC8-1096-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome 1 of Rhodobacter sphaeroides ATCC 17029."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J.
    , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Richardson P., Mackenzie C., Choudhary M., Donohue T.J., Kaplan S.
    Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 17029 / ATH 2.4.9.

Entry informationi

Entry nameiA3PIM1_RHOS1
AccessioniPrimary (citable) accession number: A3PIM1
Entry historyi
Integrated into UniProtKB/TrEMBL: April 3, 2007
Last sequence update: April 3, 2007
Last modified: May 14, 2014
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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