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A3PIM1

- A3PIM1_RHOS1

UniProt

A3PIM1 - A3PIM1_RHOS1

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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Rsph17029_1076

Organism
Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRSPH349101:GHC8-1096-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Rsph17029_1076Imported
OrganismiRhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)Imported
Taxonomic identifieri349101 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRhodobacter
ProteomesiUP000002606: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi349101.Rsph17029_1076.

Structurei

3D structure databases

ProteinModelPortaliA3PIM1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK01971.
OMAiKSASTHN.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A3PIM1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKRFAALFDL LDRTTRTSAK VAALADYFRT APEEDRVWTI GLLSGRRPKR
60 70 80 90 100
AVNTTELRSW AAEASGLPVW LAEEVHPIVG DLAETISLLL PEPSQTSDRT
110 120 130 140 150
LDGWMRELVS LTGRPAEVRR AAILDAWDRL STPERFLFNK LITGGFRMGV
160 170 180 190 200
SQGLMTRALA QATGVDEAVL AHRLMGDWKP GRIGFETLIG AHDPEADASK
210 220 230 240 250
PYPFALASPV EEVAALGDPA DWLAEWKWDG IRGQLVNRAG AFALWSRGEE
260 270 280 290 300
LVTDRFPDLA PLRDFLPPGL VIDAEVLAWG GDGPLPFAAL QKRIGRLTVP
310 320 330 340 350
KKILAEAPAH LLAYDLLEEN GEDLRAAPLA HRRARLEAVL AALPPGVPIS
360 370 380 390 400
PSPLVAFDDW ETLGGIRATA REKIAEGLML KRASSPYFVG RKRGDWWKWK
410 420 430 440 450
LDPYTVDAVM LYAQQGAGRR ATLFTDFTFG VRDGDDLVPF TKAYSGLTDA
460 470 480 490 500
EFRQITDWVR KNTLERFGPV RRVPPELVFE LAFEGIQASP RHKSGIALRF
510 520 530
PRMVRWRKDK PAAEIDTLES LRELLAATGG AAP
Length:533
Mass (Da):58,974
Last modified:April 3, 2007 - v1
Checksum:i2FF725E138390678
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000577 Genomic DNA. Translation: ABN76187.1.
RefSeqiYP_001042959.1. NC_009049.1.

Genome annotation databases

EnsemblBacteriaiABN76187; ABN76187; Rsph17029_1076.
GeneIDi4897401.
KEGGirsh:Rsph17029_1076.
PATRICi23169880. VBIRhoSph114483_1251.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000577 Genomic DNA. Translation: ABN76187.1 .
RefSeqi YP_001042959.1. NC_009049.1.

3D structure databases

ProteinModelPortali A3PIM1.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 349101.Rsph17029_1076.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABN76187 ; ABN76187 ; Rsph17029_1076 .
GeneIDi 4897401.
KEGGi rsh:Rsph17029_1076.
PATRICi 23169880. VBIRhoSph114483_1251.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000036007.
KOi K01971.
OMAi KSASTHN.
OrthoDBi EOG6Q8HXT.

Enzyme and pathway databases

BioCyci RSPH349101:GHC8-1096-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome 1 of Rhodobacter sphaeroides ATCC 17029."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J.
    , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Richardson P., Mackenzie C., Choudhary M., Donohue T.J., Kaplan S.
    Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 17029 / ATH 2.4.9Imported.

Entry informationi

Entry nameiA3PIM1_RHOS1
AccessioniPrimary (citable) accession number: A3PIM1
Entry historyi
Integrated into UniProtKB/TrEMBL: April 3, 2007
Last sequence update: April 3, 2007
Last modified: October 1, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3