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A3PIM1

- A3PIM1_RHOS1

UniProt

A3PIM1 - A3PIM1_RHOS1

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Rsph17029_1076

Organism
Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 49 (01 Oct 2014)
      Sequence version 1 (03 Apr 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciRSPH349101:GHC8-1096-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Rsph17029_1076Imported
    OrganismiRhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)Imported
    Taxonomic identifieri349101 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRhodobacter
    ProteomesiUP000002606: Chromosome 1

    Interactioni

    Protein-protein interaction databases

    STRINGi349101.Rsph17029_1076.

    Structurei

    3D structure databases

    ProteinModelPortaliA3PIM1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000036007.
    KOiK01971.
    OMAiKSASTHN.
    OrthoDBiEOG6Q8HXT.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]
    ProtoNetiSearch...

    Sequencei

    Sequence statusi: Complete.

    A3PIM1-1 [UniParc]FASTAAdd to Basket

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    MKRFAALFDL LDRTTRTSAK VAALADYFRT APEEDRVWTI GLLSGRRPKR    50
    AVNTTELRSW AAEASGLPVW LAEEVHPIVG DLAETISLLL PEPSQTSDRT 100
    LDGWMRELVS LTGRPAEVRR AAILDAWDRL STPERFLFNK LITGGFRMGV 150
    SQGLMTRALA QATGVDEAVL AHRLMGDWKP GRIGFETLIG AHDPEADASK 200
    PYPFALASPV EEVAALGDPA DWLAEWKWDG IRGQLVNRAG AFALWSRGEE 250
    LVTDRFPDLA PLRDFLPPGL VIDAEVLAWG GDGPLPFAAL QKRIGRLTVP 300
    KKILAEAPAH LLAYDLLEEN GEDLRAAPLA HRRARLEAVL AALPPGVPIS 350
    PSPLVAFDDW ETLGGIRATA REKIAEGLML KRASSPYFVG RKRGDWWKWK 400
    LDPYTVDAVM LYAQQGAGRR ATLFTDFTFG VRDGDDLVPF TKAYSGLTDA 450
    EFRQITDWVR KNTLERFGPV RRVPPELVFE LAFEGIQASP RHKSGIALRF 500
    PRMVRWRKDK PAAEIDTLES LRELLAATGG AAP 533
    Length:533
    Mass (Da):58,974
    Last modified:April 3, 2007 - v1
    Checksum:i2FF725E138390678
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000577 Genomic DNA. Translation: ABN76187.1.
    RefSeqiYP_001042959.1. NC_009049.1.

    Genome annotation databases

    EnsemblBacteriaiABN76187; ABN76187; Rsph17029_1076.
    GeneIDi4897401.
    KEGGirsh:Rsph17029_1076.
    PATRICi23169880. VBIRhoSph114483_1251.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000577 Genomic DNA. Translation: ABN76187.1 .
    RefSeqi YP_001042959.1. NC_009049.1.

    3D structure databases

    ProteinModelPortali A3PIM1.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 349101.Rsph17029_1076.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABN76187 ; ABN76187 ; Rsph17029_1076 .
    GeneIDi 4897401.
    KEGGi rsh:Rsph17029_1076.
    PATRICi 23169880. VBIRhoSph114483_1251.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000036007.
    KOi K01971.
    OMAi KSASTHN.
    OrthoDBi EOG6Q8HXT.

    Enzyme and pathway databases

    BioCyci RSPH349101:GHC8-1096-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome 1 of Rhodobacter sphaeroides ATCC 17029."
      Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J.
      , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Richardson P., Mackenzie C., Choudhary M., Donohue T.J., Kaplan S.
      Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 17029 / ATH 2.4.9Imported.

    Entry informationi

    Entry nameiA3PIM1_RHOS1
    AccessioniPrimary (citable) accession number: A3PIM1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 3, 2007
    Last sequence update: April 3, 2007
    Last modified: October 1, 2014
    This is version 49 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3

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