Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

DNA ligase D

Gene

ligD

Organism
Burkholderia pseudomallei (strain 668)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBPSE320373:GJ9C-7020-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Name:ligDImported
Ordered Locus Names:BURPS668_A3112Imported
OrganismiBurkholderia pseudomallei (strain 668)Imported
Taxonomic identifieri320373 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiapseudomallei group
ProteomesiUP000002153 Componenti: Chromosome II

Structurei

3D structure databases

ProteinModelPortaliA3NP32.
SMRiA3NP32. Positions 866-1154.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 2 hits.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 2 hits.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A3NP32-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAGKLSVYRS RRRFGETPEP EGARRSPRRT KGAGRAGDES KRRARGERVA
60 70 80 90 100
RRGRAQQPAP ARRRSALHYV IQEHHARRLH YDFRLELDGT LKSWAIPKGP
110 120 130 140 150
SLDPSVKRLA VHVEDHPLEY AAFEGEIPEG HYGAGSVIVW DRGAWTPAGG
160 170 180 190 200
IAAARAGYRA GKLSFTLDGD KLHGGWALVR GRGLRDSGGK HEQWLLIKER
210 220 230 240 250
DGDARDQADY DVLRARPGSV LGGARSGRAR RGRAAEPTER DAAAPKRARA
260 270 280 290 300
SVPKGRAEAK TSGRAPRTVS NGTAGAGKGA SKRASKREGT NTGNGARSGK
310 320 330 340 350
GSGKGSGKGA GKGGATPRRK RAAAPQSFDV DSADTDSPAA RGLALPAGLA
360 370 380 390 400
ARFGLSGAKR AALPRTLRPQ LATLVDAPPP GKDWLYEAKF DGYRVLIRID
410 420 430 440 450
RAAASRPIAV HTREGLDWSA KFAAQLDALA RLPVDRGWLD GEAVVLDRAG
460 470 480 490 500
VPDFQALQNA LGAGRSNDVT LFLFDVPFLN GFDLRGVPLE RRRALLAALV
510 520 530 540 550
AAHASDVLRY SESLAFEAAD LLTGACDAGL EGLIGKRRDG RYVEGRSRSW
560 570 580 590 600
IKLKCRRRQE FVIGGYTEPA GRRSGFGALL LGVYARAPGD EGDEGERRTR
610 620 630 640 650
GAAETRDERR RASHASHASR TSRTSRAPDA GAARAPQARP LALRYVGRVG
660 670 680 690 700
TGFGERTLRA LARTLREHET GRMPFADVPR ERSGTPVHWV KPVLVAECEF
710 720 730 740 750
AEWTGDGIVR QASFVGLRED KPARTIVREQ PQSMETEAMN EHADEHTDEH
760 770 780 790 800
TDARAERRTG GRTRRKARDG GARDAPPLAR HPKRGVAGSS TRKGARDGEA
810 820 830 840 850
GKRAAAGSSP SSSPSSSTSP SISASGRTRG GGRSASRDRA GDADEGANEG
860 870 880 890 900
ANDHAPRERA GAPKVAGVRV SHPGRVIDPH TGTRKLDLVE YWEWIAPWLL
910 920 930 940 950
PHLKGRPVSL VRAPADIGGE LFFQKHADKL EIPNVALHAG LDPGHEALIT
960 970 980 990 1000
IDDVKGLVGA AQMGTIELHT WNAHVSNIEK PDRAVFDLDP DPSLDWRAVI
1010 1020 1030 1040 1050
EAAQLTRALL DELGLVSFCK TSGGKGLHVV VPLARHAGWD DVKAFAHAVA
1060 1070 1080 1090 1100
RHMAATLPER FTATMGPRNR KGKIFVDYLR NNRGASTIAA YSVRARPGLG
1110 1120 1130 1140 1150
VSVPIAWDEL PDTTGAAQWT LANLHERLDA LKHDPWRAYA HVRQRVTAAL

RKRLSDG
Length:1,157
Mass (Da):124,771
Last modified:April 3, 2007 - v1
Checksum:i995A6A8FEAE658FD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000571 Genomic DNA. Translation: ABN87546.1.
RefSeqiWP_011853917.1. NC_009075.1.
YP_001064103.1. NC_009075.1.

Genome annotation databases

EnsemblBacteriaiABN87546; ABN87546; BURPS668_A3112.
KEGGibpd:BURPS668_A3112.
PATRICi19259188. VBIBurPse82117_6494.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000571 Genomic DNA. Translation: ABN87546.1.
RefSeqiWP_011853917.1. NC_009075.1.
YP_001064103.1. NC_009075.1.

3D structure databases

ProteinModelPortaliA3NP32.
SMRiA3NP32. Positions 866-1154.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABN87546; ABN87546; BURPS668_A3112.
KEGGibpd:BURPS668_A3112.
PATRICi19259188. VBIBurPse82117_6494.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciBPSE320373:GJ9C-7020-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 2 hits.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 2 hits.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. DeShazer D., Woods D.E., Nierman W.C.
    Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 668Imported.

Entry informationi

Entry nameiA3NP32_BURP6
AccessioniPrimary (citable) accession number: A3NP32
Entry historyi
Integrated into UniProtKB/TrEMBL: April 3, 2007
Last sequence update: April 3, 2007
Last modified: June 24, 2015
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.