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A3NP32

- A3NP32_BURP6

UniProt

A3NP32 - A3NP32_BURP6

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Protein
Submitted name: DNA ligase D
Gene
ligD, BURPS668_A3112
Organism
Burkholderia pseudomallei (strain 668)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBPSE320373:GJ9C-7020-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Name:ligDImported
Ordered Locus Names:BURPS668_A3112Imported
OrganismiBurkholderia pseudomallei (strain 668)Imported
Taxonomic identifieri320373 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiapseudomallei group
ProteomesiUP000002153: Chromosome II

Interactioni

Protein-protein interaction databases

STRINGi320373.BURPS668_A3112.

Structurei

3D structure databases

ProteinModelPortaliA3NP32.
SMRiA3NP32. Positions 866-1154.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 2 hits.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 2 hits.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A3NP32-1 [UniParc]FASTAAdd to Basket

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MAGKLSVYRS RRRFGETPEP EGARRSPRRT KGAGRAGDES KRRARGERVA     50
RRGRAQQPAP ARRRSALHYV IQEHHARRLH YDFRLELDGT LKSWAIPKGP 100
SLDPSVKRLA VHVEDHPLEY AAFEGEIPEG HYGAGSVIVW DRGAWTPAGG 150
IAAARAGYRA GKLSFTLDGD KLHGGWALVR GRGLRDSGGK HEQWLLIKER 200
DGDARDQADY DVLRARPGSV LGGARSGRAR RGRAAEPTER DAAAPKRARA 250
SVPKGRAEAK TSGRAPRTVS NGTAGAGKGA SKRASKREGT NTGNGARSGK 300
GSGKGSGKGA GKGGATPRRK RAAAPQSFDV DSADTDSPAA RGLALPAGLA 350
ARFGLSGAKR AALPRTLRPQ LATLVDAPPP GKDWLYEAKF DGYRVLIRID 400
RAAASRPIAV HTREGLDWSA KFAAQLDALA RLPVDRGWLD GEAVVLDRAG 450
VPDFQALQNA LGAGRSNDVT LFLFDVPFLN GFDLRGVPLE RRRALLAALV 500
AAHASDVLRY SESLAFEAAD LLTGACDAGL EGLIGKRRDG RYVEGRSRSW 550
IKLKCRRRQE FVIGGYTEPA GRRSGFGALL LGVYARAPGD EGDEGERRTR 600
GAAETRDERR RASHASHASR TSRTSRAPDA GAARAPQARP LALRYVGRVG 650
TGFGERTLRA LARTLREHET GRMPFADVPR ERSGTPVHWV KPVLVAECEF 700
AEWTGDGIVR QASFVGLRED KPARTIVREQ PQSMETEAMN EHADEHTDEH 750
TDARAERRTG GRTRRKARDG GARDAPPLAR HPKRGVAGSS TRKGARDGEA 800
GKRAAAGSSP SSSPSSSTSP SISASGRTRG GGRSASRDRA GDADEGANEG 850
ANDHAPRERA GAPKVAGVRV SHPGRVIDPH TGTRKLDLVE YWEWIAPWLL 900
PHLKGRPVSL VRAPADIGGE LFFQKHADKL EIPNVALHAG LDPGHEALIT 950
IDDVKGLVGA AQMGTIELHT WNAHVSNIEK PDRAVFDLDP DPSLDWRAVI 1000
EAAQLTRALL DELGLVSFCK TSGGKGLHVV VPLARHAGWD DVKAFAHAVA 1050
RHMAATLPER FTATMGPRNR KGKIFVDYLR NNRGASTIAA YSVRARPGLG 1100
VSVPIAWDEL PDTTGAAQWT LANLHERLDA LKHDPWRAYA HVRQRVTAAL 1150
RKRLSDG 1157
Length:1,157
Mass (Da):124,771
Last modified:April 3, 2007 - v1
Checksum:i995A6A8FEAE658FD
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000571 Genomic DNA. Translation: ABN87546.1.
RefSeqiYP_001064103.1. NC_009075.1.

Genome annotation databases

EnsemblBacteriaiABN87546; ABN87546; BURPS668_A3112.
GeneIDi4887264.
KEGGibpd:BURPS668_A3112.
PATRICi19259188. VBIBurPse82117_6494.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000571 Genomic DNA. Translation: ABN87546.1 .
RefSeqi YP_001064103.1. NC_009075.1.

3D structure databases

ProteinModelPortali A3NP32.
SMRi A3NP32. Positions 866-1154.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 320373.BURPS668_A3112.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABN87546 ; ABN87546 ; BURPS668_A3112 .
GeneIDi 4887264.
KEGGi bpd:BURPS668_A3112.
PATRICi 19259188. VBIBurPse82117_6494.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci BPSE320373:GJ9C-7020-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 2 hits.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 2 hits.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. DeShazer D., Woods D.E., Nierman W.C.
    Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 668Imported.

Entry informationi

Entry nameiA3NP32_BURP6
AccessioniPrimary (citable) accession number: A3NP32
Entry historyi
Integrated into UniProtKB/TrEMBL: April 3, 2007
Last sequence update: April 3, 2007
Last modified: May 14, 2014
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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