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A3NP32

- A3NP32_BURP6

UniProt

A3NP32 - A3NP32_BURP6

Protein
Submitted name:

DNA ligase D

Gene

ligD

Organism
Burkholderia pseudomallei (strain 668)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 45 (01 Oct 2014)
      Sequence version 1 (03 Apr 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciBPSE320373:GJ9C-7020-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Name:ligDImported
    Ordered Locus Names:BURPS668_A3112Imported
    OrganismiBurkholderia pseudomallei (strain 668)Imported
    Taxonomic identifieri320373 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiapseudomallei group
    ProteomesiUP000002153: Chromosome II

    Interactioni

    Protein-protein interaction databases

    STRINGi320373.BURPS668_A3112.

    Structurei

    3D structure databases

    ProteinModelPortaliA3NP32.
    SMRiA3NP32. Positions 866-1154.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 2 hits.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 2 hits.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A3NP32-1 [UniParc]FASTAAdd to Basket

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    MAGKLSVYRS RRRFGETPEP EGARRSPRRT KGAGRAGDES KRRARGERVA     50
    RRGRAQQPAP ARRRSALHYV IQEHHARRLH YDFRLELDGT LKSWAIPKGP 100
    SLDPSVKRLA VHVEDHPLEY AAFEGEIPEG HYGAGSVIVW DRGAWTPAGG 150
    IAAARAGYRA GKLSFTLDGD KLHGGWALVR GRGLRDSGGK HEQWLLIKER 200
    DGDARDQADY DVLRARPGSV LGGARSGRAR RGRAAEPTER DAAAPKRARA 250
    SVPKGRAEAK TSGRAPRTVS NGTAGAGKGA SKRASKREGT NTGNGARSGK 300
    GSGKGSGKGA GKGGATPRRK RAAAPQSFDV DSADTDSPAA RGLALPAGLA 350
    ARFGLSGAKR AALPRTLRPQ LATLVDAPPP GKDWLYEAKF DGYRVLIRID 400
    RAAASRPIAV HTREGLDWSA KFAAQLDALA RLPVDRGWLD GEAVVLDRAG 450
    VPDFQALQNA LGAGRSNDVT LFLFDVPFLN GFDLRGVPLE RRRALLAALV 500
    AAHASDVLRY SESLAFEAAD LLTGACDAGL EGLIGKRRDG RYVEGRSRSW 550
    IKLKCRRRQE FVIGGYTEPA GRRSGFGALL LGVYARAPGD EGDEGERRTR 600
    GAAETRDERR RASHASHASR TSRTSRAPDA GAARAPQARP LALRYVGRVG 650
    TGFGERTLRA LARTLREHET GRMPFADVPR ERSGTPVHWV KPVLVAECEF 700
    AEWTGDGIVR QASFVGLRED KPARTIVREQ PQSMETEAMN EHADEHTDEH 750
    TDARAERRTG GRTRRKARDG GARDAPPLAR HPKRGVAGSS TRKGARDGEA 800
    GKRAAAGSSP SSSPSSSTSP SISASGRTRG GGRSASRDRA GDADEGANEG 850
    ANDHAPRERA GAPKVAGVRV SHPGRVIDPH TGTRKLDLVE YWEWIAPWLL 900
    PHLKGRPVSL VRAPADIGGE LFFQKHADKL EIPNVALHAG LDPGHEALIT 950
    IDDVKGLVGA AQMGTIELHT WNAHVSNIEK PDRAVFDLDP DPSLDWRAVI 1000
    EAAQLTRALL DELGLVSFCK TSGGKGLHVV VPLARHAGWD DVKAFAHAVA 1050
    RHMAATLPER FTATMGPRNR KGKIFVDYLR NNRGASTIAA YSVRARPGLG 1100
    VSVPIAWDEL PDTTGAAQWT LANLHERLDA LKHDPWRAYA HVRQRVTAAL 1150
    RKRLSDG 1157
    Length:1,157
    Mass (Da):124,771
    Last modified:April 3, 2007 - v1
    Checksum:i995A6A8FEAE658FD
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000571 Genomic DNA. Translation: ABN87546.1.
    RefSeqiYP_001064103.1. NC_009075.1.

    Genome annotation databases

    EnsemblBacteriaiABN87546; ABN87546; BURPS668_A3112.
    GeneIDi4887264.
    KEGGibpd:BURPS668_A3112.
    PATRICi19259188. VBIBurPse82117_6494.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000571 Genomic DNA. Translation: ABN87546.1 .
    RefSeqi YP_001064103.1. NC_009075.1.

    3D structure databases

    ProteinModelPortali A3NP32.
    SMRi A3NP32. Positions 866-1154.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 320373.BURPS668_A3112.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABN87546 ; ABN87546 ; BURPS668_A3112 .
    GeneIDi 4887264.
    KEGGi bpd:BURPS668_A3112.
    PATRICi 19259188. VBIBurPse82117_6494.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci BPSE320373:GJ9C-7020-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 2 hits.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 2 hits.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. DeShazer D., Woods D.E., Nierman W.C.
      Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 668Imported.

    Entry informationi

    Entry nameiA3NP32_BURP6
    AccessioniPrimary (citable) accession number: A3NP32
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 3, 2007
    Last sequence update: April 3, 2007
    Last modified: October 1, 2014
    This is version 45 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3