Polyprenyl synthetase - Pyrobaculum calidifontis (strain JCM 11548 / VA1)

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A3MSH1 (A3MSH1_PYRCJ) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 43. History...

Clusters with 100%, 90%, 50% identity |

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Names·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

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Names·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
Polyprenyl synthetase EMBL ABO07588.1

Gene names

Ordered Locus Names:

Pcal_0150

Organism

Pyrobaculum calidifontis (strain JCM 11548 / VA1) [Complete proteome] [HAMAP] EMBL ABO07588.1

Taxonomic identifier

Taxonomic lineage

Archaea › Crenarchaeota › Thermoprotei › Thermoproteales › Thermoproteaceae › Pyrobaculum ›

Protein attributes

Sequence length	334 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the FPP/GGPP synthase family. RuleBase RU004466

Ontologies

Keywords
Biological process	Isoprene biosynthesis RuleBase RU004466
Molecular function	Transferase RuleBase RU004466
Technical term	3D-structure PDB 4DHD PDB 4GP1 PDB 4GP2 Complete proteome
Gene Ontology (GO)
Biological_process	isoprenoid biosynthetic process Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	transferase activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

A3MSH1 [UniParc].

Last modified April 3, 2007. Version 1.
Checksum: EA143E3BBA183661
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334

37,046

        10         20         30         40         50         60 
MDVVSRLHQK YGAEVEKALV RYLSIGLAED FREAVLYQVK TGGKRLRPLL TLAAAEAVSG 

        70         80         90        100        110        120 
QWRPALPAAA IVELIHNYSL IYDDIIDRGD VRRGLPTVRK AFGDNAAILV GIWYREAIEE 

       130        140        150        160        170        180 
AVLDTPKPTL FAKEVAEVIK AIDEGERLDI LFEAAGRSDP YFVQARWREV TLDDYIKMVS 

       190        200        210        220        230        240 
LKTGALIAAA AKWGVLSVSD DRGLAEAAWN FGMAAGVAFQ IIDDVLDIYG DPKKFGKEIG 

       250        260        270        280        290        300 
KDIKEHKRGN AVVAVALSHL GEGERRRLLE ILAREVVEEA DVREAVALLD SVGAREEALR 

       310        320        330 
LAARYREEAE RHLAKIPNNG TLKELLDFIV AREY

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete sequence of Pyrobaculum calidifontis JCM 11548." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N. Richardson P. Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: JCM 11548 / VA1.
[2]	"Crystal Structure of Isoprenoid Synthase from Pyrobaculum Calidifontis." Patskovsky Y., Toro R., Bhosle R., Hillerich B., Seidel R.D., Washington E., Scott Glenn A., Chowdhury S., Evans B., Hammonds J., Zencheck W.D., Imker H.J., Poulter C.D., Gerlt J.A., Almo S.C. Submitted (JAN-2012) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.65 ANGSTROMS).
[3]	"Crystal Structure of Isoprenoid Synthase from Pyrobaculum Calidifontis." Patskovsky Y., Toro R., Bhosle R., Hillerich B., Seidel R.D., Washington E., Scott Glenn A., Chowdury S., Evans B., Hammonds J., Zencheck W.D., Imker H.J., Poulter C.D., Gerlt J.A., Almo S.C. Submitted (AUG-2012) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CP000561 Genomic DNA. Translation: ABO07588.1.

RefSeq

YP_001055054.1. NC_009073.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
4DHD	X-ray	1.65	A	1-334	[»]
4GP1	X-ray	1.94	A	1-334	[»]
4GP2	X-ray	2.00	A/B	1-334	[»]

ProteinModelPortal

ModBase

Protein-protein interaction databases

STRING

410359.Pcal_0150.

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblBacteria

ABO07588; ABO07588; Pcal_0150.

GeneID

KEGG

Organism-specific databases

CMR

Phylogenomic databases

eggNOG

HOGENOM

KO

OMA

ProtClustDB

Enzyme and pathway databases

BioCyc

PCAL410359:GIX2-151-MONOMER.

Family and domain databases

Gene3D

1.10.600.10. 1 hit.

InterPro

IPR000092. Polyprenyl_synt.
IPR017446. Polyprenyl_synth-rel.
IPR008949. Terpenoid_synth.
[Graphical view]

PANTHER

PTHR12001. PTHR12001. 1 hit.

Pfam

PF00348. polyprenyl_synt. 1 hit.
[Graphical view]

SUPFAM

SSF48576. Terpenoid_synth. 1 hit.

PROSITE

PS00723. POLYPRENYL_SYNTHASE_1. 1 hit.
[Graphical view]

ProtoNet

Entry information

Entry name

A3MSH1_PYRCJ

Accession

Primary (citable) accession number: A3MSH1

Entry history

Integrated into UniProtKB/TrEMBL:	April 3, 2007
Last sequence update:	April 3, 2007
Last modified:	May 1, 2013
This is version 43 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

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Names·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info