A3LXG1 (A3LXG1_PICST) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Aspartyl-tRNA synthetase EMBL ABN67802.2
EC=6.1.1.12 EMBL ABN67802.2

Gene names

Name:	MSD1 EMBL ABN67802.2
ORF Names:	PICST_61618 EMBL ABN67802.2

Organism

Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) (Yeast) (Pichia stipitis) [Complete proteome]

Taxonomic identifier

322104 [NCBI]

Taxonomic lineage

Eukaryota › Fungi › Dikarya › Ascomycota › Saccharomycotina › Saccharomycetes › Saccharomycetales › Debaryomycetaceae › Scheffersomyces

Protein attributes

Sequence length	668 AA.
Sequence status	Fragment.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the class-II aminoacyl-tRNA synthetase family. RuleBase RU003746

Ontologies

Keywords
Molecular function	Aminoacyl-tRNA synthetase EMBL ABN67802.2 Ligase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	tRNA aminoacylation for protein translation Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: InterPro aspartate-tRNA ligase activity Inferred from electronic annotation. Source: EC nucleic acid binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	EMBL ABN67802.2

Sequences

	Sequence		Length	Mass (Da)
	A3LXG1 [UniParc]. Last modified July 24, 2007. Version 2. Checksum: 034A6E8EF3054AE9	FASTA	668	76,096
	10 20 30 40 50 60 TSLPDKELTL AKFDFPLATH SIRKVTYKLD SFLDDKSIKV TINGHINRKP RIRPELSFAE 70 80 90 100 110 120 IRDSNGDCTQ ILLTPQTTSS KLFDLLKTTT VEDAVSVTGH VQLKKMKPGD ATREWELVVD 130 140 150 160 170 180 NLQILNSSNL DAARLDKLKH SNPEQLPPQF RYLQLRTKFY QNALKTRSKV AMLIRNIFTE 190 200 210 220 230 240 NHEFTEIETP LLFKSTPEGA REFLVPTRSP DKFYALPQSP QQYKQILMSS GFTRYFQIAK 250 260 270 280 290 300 CFRDEDLRAD RQPEFTQVDL EMAYVNNCDQ VGVVVEDLIH NVWNRIRNIS TYRVNEQGYL 310 320 330 340 350 360 EAIDFDSTKP NSSLHFGKLK YIDALCKYGI DKPDLRSKLE FVNLSELFIP SSTNNGQFPV 370 380 390 400 410 420 LEACILKKAF EPSKGKYKLP RSLIDPLSYT RRKPIVIPIQ DENDATNWYK KFIEKKVFSE 430 440 450 460 470 480 AATFSEHKLQ ASLDLEAGDI LAFSTRAELP YENPTPLGKF RQLAINEFPE KWNREIYDKS 490 500 510 520 530 540 SGTISEVKDT SAIFVGSWVV EFPLFSPVEI SSSSNNDFPE YDFTSFESTH HPFTMAKHED 550 560 570 580 590 600 YDLLETAPLK VRGEHYDLVI NGVEVGGGSR RIHDAELQKF VFKNILNITN YNDLFGHLLH 610 620 630 640 650 660 ALSMGCPPHA GLALGFDRLC AMLLGSASIR DVIAFPKNQS GFDPVVESPT SVSESTLNQY YITTKLNS

References

[1]

"Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis." Jeffries T.W., Grigoriev I.V., Grimwood J., Laplaza J.M., Aerts A., Salamov A., Schmutz J., Lindquist E., Dehal P., Shapiro H., Jin Y.-S., Passoth V., Richardson P.M. Nat. Biotechnol. 25:319-326(2007) [PubMed: 17334359] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000500 Genomic DNA. Translation: ABN67802.2.
RefSeq	XP_001385831.2. XM_001385794.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4840358.
GenomeReviews	Gene locus MSD1 in contig CP000500_GR.
KEGG	pic:PICST_61618.
Phylogenomic databases
HOGENOM	HBG396032.
OMA	AFPKTQQ.
OrthoDB	EOG4J40R5.
Family and domain databases
InterPro	IPR004364. aa-tRNA-synt_II. IPR018150. aa-tRNA-synt_II-like. IPR006195. aa-tRNA-synth_II. IPR004524. Asp-tRNA-synth_IIb_bac/mt. IPR002312. Asp/Asn-tRNA-synth_IIb. IPR004115. GAD_dom. IPR012340. NA-bd_OB-fold. IPR016027. NA-bd_OB-fold-like. IPR004365. NA-bd_OB_tRNA-helicase. [Graphical view]
Gene3D	G3DSA:3.30.1360.30. GAD_dom. 1 hit. G3DSA:2.40.50.140. OB_NA_bd_sub. 1 hit.
KO	K01876.
PANTHER	PTHR22594. aa-tRNA-synt_II. 1 hit. PTHR22594:SF5. AspS_bac. 1 hit.
Pfam	PF00152. tRNA-synt_2. 1 hit. PF01336. tRNA_anti. 1 hit. [Graphical view]
PRINTS	PR01042. TRNASYNTHASP.
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR00459. AspS_bact. 1 hit.
PROSITE	PS50862. AA_TRNA_LIGASE_II. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A3LXG1_PICST

Accession

Primary (citable) accession number: A3LXG1

Entry history

Integrated into UniProtKB/TrEMBL:	April 3, 2007
Last sequence update:	July 24, 2007
Last modified:	November 16, 2011
This is version 43 of the entry and version 2 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)