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Protein

Glucose starvation modulator protein 1

Gene

GSM1

Organism
Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) (Yeast) (Pichia stipitis)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Transcription factor which regulates nonfermentable carbon utilization.By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi20 – 4829Zn(2)-C6 fungal-typePROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding RNA polymerase II transcription factor activity Source: InterPro
  3. zinc ion binding Source: InterPro
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Glucose starvation modulator protein 1
Gene namesi
Name:GSM1
Synonyms:HBR1
ORF Names:PICST_68007
OrganismiScheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) (Yeast) (Pichia stipitis)
Taxonomic identifieri322104 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesDebaryomycetaceaeScheffersomyces
ProteomesiUP000002258 Componenti: Chromosome 6

Subcellular locationi

Nucleus PROSITE-ProRule annotation

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 520520Glucose starvation modulator protein 1PRO_0000406490Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi4924.PICST_68007.

Structurei

3D structure databases

ProteinModelPortaliA3LWY2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini376 – 44570PASAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi124 – 1274Poly-Gln

Sequence similaritiesi

Belongs to the ERT1/acuK family.Curated
Contains 1 PAS (PER-ARNT-SIM) domain.Curated
Contains 1 Zn(2)-C6 fungal-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiNOG48118.
HOGENOMiHOG000248519.
InParanoidiA3LWY2.
OMAiFIMELMY.
OrthoDBiEOG70KGZB.

Family and domain databases

Gene3Di4.10.240.10. 1 hit.
InterProiIPR001138. Zn2-C6_fun-type_DNA-bd.
[Graphical view]
PfamiPF00172. Zn_clus. 1 hit.
[Graphical view]
SMARTiSM00066. GAL4. 1 hit.
[Graphical view]
SUPFAMiSSF57701. SSF57701. 1 hit.
PROSITEiPS00463. ZN2_CY6_FUNGAL_1. 1 hit.
PS50048. ZN2_CY6_FUNGAL_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A3LWY2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTKRLSPHEK KNRKPASRAC VFCHEKHLQC SNERPCKNCV KRGLAHECRD
60 70 80 90 100
VIRKRAKYLN TNSRRGSEAQ AHADYPHNPI DGFMSPTIKP EIPSPASNMV
110 120 130 140 150
VSPQFVGNAL LQQEVQHPQQ FHPQQQQKLS LHNSMLNTTN DVLNRLLEEQ
160 170 180 190 200
NFKDTDSDNM SANSVNASRP NTAIGTGTFS SNYLNEEYLM LGDIILHSKP
210 220 230 240 250
TSPSPSNTSV SEYNTNTVSP NFSSQINYDD LNQPRRKVLQ RLKDSRPFIS
260 270 280 290 300
LGFSNESSQL PNLNSSNIAQ SSSIPTEYVS PLVTHHLYQS VQDIYTNNIM
310 320 330 340 350
NFDYPQSYHS LTHFLKKRFS GNNLPAEQKQ AKRQSLLVIL KLIASYRPTF
360 370 380 390 400
ISAHKSLLKP YDLQFLEMTF QRCLIDYEKL SQLNSSPTII WRRTGEIVSI
410 420 430 440 450
TDDLLSLLGY NLADLLSHRT FIMELMYDDE SITNYFRLFK TVAVGNLHSS
460 470 480 490 500
IITKIKLTKN QNRNVSDQTG TRRLSYELSE RDHIEFCSVW TVKRDMFDLP
510 520
MMIIGQFLPI LPAGDGVRMY
Length:520
Mass (Da):59,472
Last modified:July 24, 2007 - v2
Checksum:iFD562E539C5211CE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000500 Genomic DNA. Translation: ABN67713.2.
RefSeqiXP_001385742.2. XM_001385705.1.

Genome annotation databases

GeneIDi4840334.
KEGGipic:PICST_68007.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000500 Genomic DNA. Translation: ABN67713.2.
RefSeqiXP_001385742.2. XM_001385705.1.

3D structure databases

ProteinModelPortaliA3LWY2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi4924.PICST_68007.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi4840334.
KEGGipic:PICST_68007.

Phylogenomic databases

eggNOGiNOG48118.
HOGENOMiHOG000248519.
InParanoidiA3LWY2.
OMAiFIMELMY.
OrthoDBiEOG70KGZB.

Family and domain databases

Gene3Di4.10.240.10. 1 hit.
InterProiIPR001138. Zn2-C6_fun-type_DNA-bd.
[Graphical view]
PfamiPF00172. Zn_clus. 1 hit.
[Graphical view]
SMARTiSM00066. GAL4. 1 hit.
[Graphical view]
SUPFAMiSSF57701. SSF57701. 1 hit.
PROSITEiPS00463. ZN2_CY6_FUNGAL_1. 1 hit.
PS50048. ZN2_CY6_FUNGAL_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545.

Entry informationi

Entry nameiGSM1_PICST
AccessioniPrimary (citable) accession number: A3LWY2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 5, 2011
Last sequence update: July 24, 2007
Last modified: January 7, 2015
This is version 47 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.