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A3KQ87 (A3KQ87_DANRE) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 56. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length692 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Binds 1 calcium ion per subunit By similarity. PIRSR PIRSR000459-2

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSDARP00000119989

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site2741 By similarity
Active site3331 By similarity PIRSR PIRSR000459-1
Active site3561 By similarity
Metal binding3961Calcium By similarity PIRSR PIRSR000459-2
Metal binding3981Calcium By similarity PIRSR PIRSR000459-2
Metal binding4451Calcium By similarity PIRSR PIRSR000459-2
Metal binding4501Calcium By similarity PIRSR PIRSR000459-2

Sequences

Sequence LengthMass (Da)Tools
A3KQ87 [UniParc].

Last modified April 3, 2007. Version 1.
Checksum: 3AFEB68748A4CC59

FASTA69277,936
        10         20         30         40         50         60 
MASYNAILSD VDLQCYENNH AHRTEEMDVE RLLVRRGQPF SVVLQCTEQI PQLPDHQINL 

        70         80         90        100        110        120 
ILHLGKNNEV VLKVSDSEQD PGKWWFSQRN AQGEVMLTLH SPADAPVGLY SMTVVLLSAD 

       130        140        150        160        170        180 
GEIQEQTSPQ TFYLLFNPWC KDDCVYLPSE EMLQEYILNE NGILYQGAWD DITTVPWNFG 

       190        200        210        220        230        240 
QFEKDVVDIC FDVLDNSPAA LKNSEMDIFN RASPVYVSRT ITAMVNANDD RGVVSGRWDG 

       250        260        270        280        290        300 
EYSDGVAPTR WTGSVPILRR WSEDGGQKVR YGQCWVFTGV ACTVLRCLGI PTRCITNYSS 

       310        320        330        340        350        360 
AHDTDANIAV DYLVNDQLES VSEGRKDTIW NYHCWVESWM KREDLPEGYD GWQVLDPTPQ 

       370        380        390        400        410        420 
ERSDGIFCCG PCPVRAVKEG EVGLKYDTPF VFSEVNADLI VWIVHPDGER SEVSQNSKII 

       430        440        450        460        470        480 
GRKISTKSVY GDFREDITAN YKYPEGSMKE REVYKKAGRQ VGQKKDGPGQ LELFIKHAPA 

       490        500        510        520        530        540 
IHGTDFDVII EVYNAGREDT DAKLTVTSNA ITYNSIHRGE CQRKTTSLTV PAYKAHKEVL 

       550        560        570        580        590        600 
RLQYDHYGAC VSEHHMIRVT ALLQPNDQDN LILQETNIPL KMPALHVKII GNAIVSRKLT 

       610        620        630        640        650        660 
AHISFTNPLP INLQGGVFTV EGAGLTEARE IKTHGKIESG QTVTVKFSFK PTRAGLRKLL 

       670        680        690 
VDFDSDRLRD VKGEASVIVR TRMRHVNAVP EI 

« Hide

References

« Hide 'large scale' references
[1]"The zebrafish reference genome sequence and its relationship to the human genome."
Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J. expand/collapse author list , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Tuebingen Ensembl ENSDARP00000119989.
[2]Ensembl
Submitted (AUG-2013) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Tuebingen Ensembl ENSDARP00000119989.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BX571681 Genomic DNA. No translation available.
RefSeqXP_005159207.1. XM_005159150.1.
XP_687398.2. XM_682306.5.

3D structure databases

ProteinModelPortalA3KQ87.
SMRA3KQ87. Positions 6-682.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING7955.ENSDARP00000074762.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSDART00000142422; ENSDARP00000119989; ENSDARG00000093381.
GeneID559012.
KEGGdre:559012.

Organism-specific databases

CTD559012.
ZFINZDB-GENE-050420-97. tgm2l.

Phylogenomic databases

eggNOGNOG80379.
GeneTreeENSGT00740000115156.
HOVERGENHBG004342.
InParanoidA3KQ87.
KOK05625.
OMAHAHRTEE.
OrthoDBEOG72RMXG.
PhylomeDBA3KQ87.
TreeFamTF324278.

Family and domain databases

Gene3D2.60.40.10. 3 hits.
3.90.260.10. 1 hit.
InterProIPR023608. Gln_gamma-glutamylTfrase_euk.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
IPR002931. Transglutaminase-like.
IPR008958. Transglutaminase_C.
IPR001102. Transglutaminase_N.
[Graphical view]
PANTHERPTHR11590. PTHR11590. 1 hit.
PfamPF00927. Transglut_C. 2 hits.
PF01841. Transglut_core. 1 hit.
PF00868. Transglut_N. 1 hit.
[Graphical view]
PIRSFPIRSF000459. TGM_EBP42. 1 hit.
SMARTSM00460. TGc. 1 hit.
[Graphical view]
SUPFAMSSF49309. SSF49309. 2 hits.
SSF81296. SSF81296. 1 hit.
ProtoNetSearch...

Other

NextBio20882740.
PROA3KQ87.

Entry information

Entry nameA3KQ87_DANRE
AccessionPrimary (citable) accession number: A3KQ87
Entry history
Integrated into UniProtKB/TrEMBL: April 3, 2007
Last sequence update: April 3, 2007
Last modified: July 9, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)