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A3KQ87

- A3KQ87_DANRE

UniProt

A3KQ87 - A3KQ87_DANRE

Protein
Submitted name:

Uncharacterized protein

Gene

tgm2l

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 57 (01 Oct 2014)
      Sequence version 1 (03 Apr 2007)
      Previous versions | rss
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    Functioni

    Cofactori

    Binds 1 calcium ion per subunit.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei274 – 2741UniRule annotation
    Active sitei274 – 2741 By similarity
    Active sitei333 – 3331UniRule annotation
    Active sitei356 – 3561UniRule annotation
    Active sitei356 – 3561 By similarity
    Metal bindingi396 – 3961Calcium
    Metal bindingi398 – 3981Calcium
    Metal bindingi445 – 4451Calcium
    Metal bindingi450 – 4501Calcium

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. protein-glutamine gamma-glutamyltransferase activity Source: InterPro

    GO - Biological processi

    1. peptide cross-linking Source: InterPro

    Keywords - Ligandi

    CalciumUniRule annotation, Metal-bindingUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Name:tgm2lImported
    OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
    Taxonomic identifieri7955 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
    ProteomesiUP000000437: Chromosome 18

    Organism-specific databases

    ZFINiZDB-GENE-050420-97. tgm2l.

    Interactioni

    Protein-protein interaction databases

    STRINGi7955.ENSDARP00000074762.

    Structurei

    3D structure databases

    ProteinModelPortaliA3KQ87.
    SMRiA3KQ87. Positions 6-682.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiNOG80379.
    GeneTreeiENSGT00740000115156.
    HOVERGENiHBG004342.
    InParanoidiA3KQ87.
    KOiK05625.
    OMAiHAHRTEE.
    OrthoDBiEOG72RMXG.
    PhylomeDBiA3KQ87.
    TreeFamiTF324278.

    Family and domain databases

    Gene3Di2.60.40.10. 3 hits.
    3.90.260.10. 1 hit.
    InterProiIPR023608. Gln_gamma-glutamylTfrase_euk.
    IPR013783. Ig-like_fold.
    IPR014756. Ig_E-set.
    IPR002931. Transglutaminase-like.
    IPR008958. Transglutaminase_C.
    IPR001102. Transglutaminase_N.
    [Graphical view]
    PANTHERiPTHR11590. PTHR11590. 1 hit.
    PfamiPF00927. Transglut_C. 2 hits.
    PF01841. Transglut_core. 1 hit.
    PF00868. Transglut_N. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000459. TGM_EBP42. 1 hit.
    SMARTiSM00460. TGc. 1 hit.
    [Graphical view]
    SUPFAMiSSF49309. SSF49309. 2 hits.
    SSF81296. SSF81296. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A3KQ87-1 [UniParc]FASTAAdd to Basket

    « Hide

    MASYNAILSD VDLQCYENNH AHRTEEMDVE RLLVRRGQPF SVVLQCTEQI    50
    PQLPDHQINL ILHLGKNNEV VLKVSDSEQD PGKWWFSQRN AQGEVMLTLH 100
    SPADAPVGLY SMTVVLLSAD GEIQEQTSPQ TFYLLFNPWC KDDCVYLPSE 150
    EMLQEYILNE NGILYQGAWD DITTVPWNFG QFEKDVVDIC FDVLDNSPAA 200
    LKNSEMDIFN RASPVYVSRT ITAMVNANDD RGVVSGRWDG EYSDGVAPTR 250
    WTGSVPILRR WSEDGGQKVR YGQCWVFTGV ACTVLRCLGI PTRCITNYSS 300
    AHDTDANIAV DYLVNDQLES VSEGRKDTIW NYHCWVESWM KREDLPEGYD 350
    GWQVLDPTPQ ERSDGIFCCG PCPVRAVKEG EVGLKYDTPF VFSEVNADLI 400
    VWIVHPDGER SEVSQNSKII GRKISTKSVY GDFREDITAN YKYPEGSMKE 450
    REVYKKAGRQ VGQKKDGPGQ LELFIKHAPA IHGTDFDVII EVYNAGREDT 500
    DAKLTVTSNA ITYNSIHRGE CQRKTTSLTV PAYKAHKEVL RLQYDHYGAC 550
    VSEHHMIRVT ALLQPNDQDN LILQETNIPL KMPALHVKII GNAIVSRKLT 600
    AHISFTNPLP INLQGGVFTV EGAGLTEARE IKTHGKIESG QTVTVKFSFK 650
    PTRAGLRKLL VDFDSDRLRD VKGEASVIVR TRMRHVNAVP EI 692
    Length:692
    Mass (Da):77,936
    Last modified:April 3, 2007 - v1
    Checksum:i3AFEB68748A4CC59
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BX571681 Genomic DNA. No translation available.
    RefSeqiXP_005159207.1. XM_005159150.1.
    XP_687398.2. XM_682306.5.

    Genome annotation databases

    EnsembliENSDART00000142422; ENSDARP00000119989; ENSDARG00000093381.
    GeneIDi559012.
    KEGGidre:559012.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BX571681 Genomic DNA. No translation available.
    RefSeqi XP_005159207.1. XM_005159150.1.
    XP_687398.2. XM_682306.5.

    3D structure databases

    ProteinModelPortali A3KQ87.
    SMRi A3KQ87. Positions 6-682.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 7955.ENSDARP00000074762.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSDART00000142422 ; ENSDARP00000119989 ; ENSDARG00000093381 .
    GeneIDi 559012.
    KEGGi dre:559012.

    Organism-specific databases

    CTDi 559012.
    ZFINi ZDB-GENE-050420-97. tgm2l.

    Phylogenomic databases

    eggNOGi NOG80379.
    GeneTreei ENSGT00740000115156.
    HOVERGENi HBG004342.
    InParanoidi A3KQ87.
    KOi K05625.
    OMAi HAHRTEE.
    OrthoDBi EOG72RMXG.
    PhylomeDBi A3KQ87.
    TreeFami TF324278.

    Miscellaneous databases

    NextBioi 20882740.
    PROi A3KQ87.

    Family and domain databases

    Gene3Di 2.60.40.10. 3 hits.
    3.90.260.10. 1 hit.
    InterProi IPR023608. Gln_gamma-glutamylTfrase_euk.
    IPR013783. Ig-like_fold.
    IPR014756. Ig_E-set.
    IPR002931. Transglutaminase-like.
    IPR008958. Transglutaminase_C.
    IPR001102. Transglutaminase_N.
    [Graphical view ]
    PANTHERi PTHR11590. PTHR11590. 1 hit.
    Pfami PF00927. Transglut_C. 2 hits.
    PF01841. Transglut_core. 1 hit.
    PF00868. Transglut_N. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000459. TGM_EBP42. 1 hit.
    SMARTi SM00460. TGc. 1 hit.
    [Graphical view ]
    SUPFAMi SSF49309. SSF49309. 2 hits.
    SSF81296. SSF81296. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The zebrafish reference genome sequence and its relationship to the human genome."
      Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
      , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
      Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: TuebingenImported.
    2. Ensembl
      Submitted (AUG-2013) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: TuebingenImported.

    Entry informationi

    Entry nameiA3KQ87_DANRE
    AccessioniPrimary (citable) accession number: A3KQ87
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 3, 2007
    Last sequence update: April 3, 2007
    Last modified: October 1, 2014
    This is version 57 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3