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Protein
Submitted name:

Uncharacterized protein

Gene

tgm2l

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Cofactori

Note: Binds 1 calcium ion per subunit.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei274 – 2741UniRule annotation
Active sitei333 – 3331UniRule annotation
Active sitei356 – 3561UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

CalciumUniRule annotation, Metal-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:tgm2lImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
ProteomesiUP000000437 Componenti: Chromosome 18

Organism-specific databases

ZFINiZDB-GENE-050420-97. tgm2l.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000119989.

Structurei

3D structure databases

ProteinModelPortaliA3KQ87.
SMRiA3KQ87. Positions 6-682.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiNOG80379.
GeneTreeiENSGT00760000119108.
HOVERGENiHBG004342.
InParanoidiA3KQ87.
OMAiSEHHLIR.
OrthoDBiEOG72RMXG.
PhylomeDBiA3KQ87.
TreeFamiTF324278.

Family and domain databases

Gene3Di2.60.40.10. 3 hits.
3.90.260.10. 1 hit.
InterProiIPR023608. Gln_gamma-glutamylTfrase_euk.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
IPR002931. Transglutaminase-like.
IPR008958. Transglutaminase_C.
IPR001102. Transglutaminase_N.
[Graphical view]
PANTHERiPTHR11590. PTHR11590. 1 hit.
PfamiPF00927. Transglut_C. 2 hits.
PF01841. Transglut_core. 1 hit.
PF00868. Transglut_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000459. TGM_EBP42. 1 hit.
SMARTiSM00460. TGc. 1 hit.
[Graphical view]
SUPFAMiSSF49309. SSF49309. 2 hits.
SSF81296. SSF81296. 1 hit.

Sequencei

Sequence statusi: Complete.

A3KQ87-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASYNAILSD VDLQCYENNH AHRTEEMDVE RLLVRRGQPF SVVLQCTEQI
60 70 80 90 100
PQLPDHQINL ILHLGKNNEV VLKVSDSEQD PGKWWFSQRN AQGEVMLTLH
110 120 130 140 150
SPADAPVGLY SMTVVLLSAD GEIQEQTSPQ TFYLLFNPWC KDDCVYLPSE
160 170 180 190 200
EMLQEYILNE NGILYQGAWD DITTVPWNFG QFEKDVVDIC FDVLDNSPAA
210 220 230 240 250
LKNSEMDIFN RASPVYVSRT ITAMVNANDD RGVVSGRWDG EYSDGVAPTR
260 270 280 290 300
WTGSVPILRR WSEDGGQKVR YGQCWVFTGV ACTVLRCLGI PTRCITNYSS
310 320 330 340 350
AHDTDANIAV DYLVNDQLES VSEGRKDTIW NYHCWVESWM KREDLPEGYD
360 370 380 390 400
GWQVLDPTPQ ERSDGIFCCG PCPVRAVKEG EVGLKYDTPF VFSEVNADLI
410 420 430 440 450
VWIVHPDGER SEVSQNSKII GRKISTKSVY GDFREDITAN YKYPEGSMKE
460 470 480 490 500
REVYKKAGRQ VGQKKDGPGQ LELFIKHAPA IHGTDFDVII EVYNAGREDT
510 520 530 540 550
DAKLTVTSNA ITYNSIHRGE CQRKTTSLTV PAYKAHKEVL RLQYDHYGAC
560 570 580 590 600
VSEHHMIRVT ALLQPNDQDN LILQETNIPL KMPALHVKII GNAIVSRKLT
610 620 630 640 650
AHISFTNPLP INLQGGVFTV EGAGLTEARE IKTHGKIESG QTVTVKFSFK
660 670 680 690
PTRAGLRKLL VDFDSDRLRD VKGEASVIVR TRMRHVNAVP EI
Length:692
Mass (Da):77,936
Last modified:April 3, 2007 - v1
Checksum:i3AFEB68748A4CC59
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX571681 Genomic DNA. No translation available.
RefSeqiXP_005159207.1. XM_005159150.2.
XP_687398.2. XM_682306.6.

Genome annotation databases

EnsembliENSDART00000142422; ENSDARP00000119989; ENSDARG00000093381.
GeneIDi559012.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX571681 Genomic DNA. No translation available.
RefSeqiXP_005159207.1. XM_005159150.2.
XP_687398.2. XM_682306.6.

3D structure databases

ProteinModelPortaliA3KQ87.
SMRiA3KQ87. Positions 6-682.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000119989.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000142422; ENSDARP00000119989; ENSDARG00000093381.
GeneIDi559012.

Organism-specific databases

CTDi559012.
ZFINiZDB-GENE-050420-97. tgm2l.

Phylogenomic databases

eggNOGiNOG80379.
GeneTreeiENSGT00760000119108.
HOVERGENiHBG004342.
InParanoidiA3KQ87.
OMAiSEHHLIR.
OrthoDBiEOG72RMXG.
PhylomeDBiA3KQ87.
TreeFamiTF324278.

Miscellaneous databases

NextBioi20882740.
PROiA3KQ87.

Family and domain databases

Gene3Di2.60.40.10. 3 hits.
3.90.260.10. 1 hit.
InterProiIPR023608. Gln_gamma-glutamylTfrase_euk.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
IPR002931. Transglutaminase-like.
IPR008958. Transglutaminase_C.
IPR001102. Transglutaminase_N.
[Graphical view]
PANTHERiPTHR11590. PTHR11590. 1 hit.
PfamiPF00927. Transglut_C. 2 hits.
PF01841. Transglut_core. 1 hit.
PF00868. Transglut_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000459. TGM_EBP42. 1 hit.
SMARTiSM00460. TGc. 1 hit.
[Graphical view]
SUPFAMiSSF49309. SSF49309. 2 hits.
SSF81296. SSF81296. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The zebrafish reference genome sequence and its relationship to the human genome."
    Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
    , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
    Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: TuebingenImported.
  2. Ensembl
    Submitted (AUG-2013) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: TuebingenImported.

Entry informationi

Entry nameiA3KQ87_DANRE
AccessioniPrimary (citable) accession number: A3KQ87
Entry historyi
Integrated into UniProtKB/TrEMBL: April 3, 2007
Last sequence update: April 3, 2007
Last modified: June 24, 2015
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.