A3KN83 (SBNO1_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
April 3, 2013.
Version 54.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Protein strawberry notch homolog 1 Alternative name(s): Monocyte protein 3 Short name=MOP-3 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1393 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Sequence similarities | Belongs to the SBNO family. |
| Sequence caution | The sequence AAQ76814.1 differs from that shown. Reason: Erroneous initiation. |
Ontologies
| Keywords | |
|---|---|
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Coiled coil |
| PTM | Acetylation Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Alternative products
| This entry describes 4 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: A3KN83-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: A3KN83-2) The sequence of this isoform differs from the canonical sequence as follows: 80-81: QQ → Q | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 3 (identifier: A3KN83-3) The sequence of this isoform differs from the canonical sequence as follows: 78-79: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 4 (identifier: A3KN83-4) The sequence of this isoform differs from the canonical sequence as follows: 80-81: QQ → Q 722-733: VGGLTGSSSDDS → MSLMRMMKMIPG 734-1393: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1393 | 1393 | Protein strawberry notch homolog 1 | PRO_0000314555 | |||||
Regions | |||||||||
| Coiled coil | 843 – 870 | 28 | Potential | ||||||
| Compositional bias | 784 – 793 | 10 | Poly-Lys | ||||||
Amino acid modifications | |||||||||
| Modified residue | 149 | 1 | N6-acetyllysine Ref.8 | ||||||
| Modified residue | 214 | 1 | Phosphoserine Ref.6 | ||||||
| Modified residue | 413 | 1 | N6-acetyllysine Ref.8 | ||||||
| Modified residue | 697 | 1 | Phosphoserine Ref.5 | ||||||
| Modified residue | 754 | 1 | Phosphoserine Ref.9 Ref.11 | ||||||
| Modified residue | 755 | 1 | Phosphoserine Ref.9 Ref.11 | ||||||
| Modified residue | 768 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 794 | 1 | Phosphoserine Ref.6 Ref.7 Ref.9 | ||||||
| Modified residue | 815 | 1 | Phosphoserine Ref.7 | ||||||
| Modified residue | 1222 | 1 | N6-acetyllysine Ref.8 | ||||||
Natural variations | |||||||||
| Alternative sequence | 78 – 79 | 2 | Missing in isoform 3. | VSP_030295 | |||||
| Alternative sequence | 80 – 81 | 2 | QQ → Q in isoform 2 and isoform 4. | VSP_030296 | |||||
| Alternative sequence | 722 – 733 | 12 | VGGLT…SSDDS → MSLMRMMKMIPG in isoform 4. | VSP_030297 | |||||
| Alternative sequence | 734 – 1393 | 660 | Missing in isoform 4. | VSP_030298 | |||||
| Natural variant | 634 | 1 | T → S in a breast cancer sample; somatic mutation. Ref.12 | VAR_037910 | |||||
| Natural variant | 728 | 1 | S → N. Corresponds to variant rs1060105 [ dbSNP | Ensembl ]. | VAR_037911 | |||||
| Natural variant | 729 | 1 | S → N. Corresponds to variant rs1060105 [ dbSNP | Ensembl ]. | VAR_057794 | |||||
| Natural variant | 889 | 1 | E → K in a breast cancer sample; somatic mutation. Ref.12 | VAR_037912 | |||||
| Natural variant | 997 | 1 | S → C in a breast cancer sample; somatic mutation. Ref.12 | VAR_037913 | |||||
Experimental info | |||||||||
| Sequence conflict | 4 | 1 | P → Q in AAQ76814. Ref.4 | ||||||
| Sequence conflict | 14 | 1 | S → R in BAA91842. Ref.3 | ||||||
| Sequence conflict | 555 | 1 | V → A in AAQ76814. Ref.4 | ||||||
| Sequence conflict | 774 | 1 | N → S in BAB19784. Ref.1 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Molecular and biological characterization of a new nuclear protein, MOP-3 which is highly expressed in human monocytes." Takayama K., Ukai Y., Fujii Y., Yoshimoto M. Submitted (MAY-1998) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2). Tissue: Blood. |
| [2] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-793 (ISOFORM 3). Tissue: Placenta. |
| [3] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-783 (ISOFORM 2). Tissue: Teratocarcinoma. |
| [4] | "NovelFam3000 -- uncharacterized human protein domains conserved across model organisms." Kemmer D., Podowski R.M., Arenillas D., Lim J., Hodges E., Roth P., Sonnhammer E.L.L., Hoeoeg C., Wasserman W.W. BMC Genomics 7:48-48(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 2-1393 (ISOFORM 4). |
| [5] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-697, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [6] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-214 AND SER-794, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [7] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-794 AND SER-815, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [8] | "Lysine acetylation targets protein complexes and co-regulates major cellular functions." Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T.C., Olsen J.V., Mann M. Science 325:834-840(2009) [PubMed] [Europe PMC] [Abstract] Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-149; LYS-413 AND LYS-1222, MASS SPECTROMETRY. |
| [9] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-754; SER-755 AND SER-794, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [10] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [11] | "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation." Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B. Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-754 AND SER-755, MASS SPECTROMETRY. |
| [12] | "The consensus coding sequences of human breast and colorectal cancers." Sjoeblom T., Jones S., Wood L.D., Parsons D.W., Lin J., Barber T.D., Mandelker D., Leary R.J., Ptak J., Silliman N., Szabo S., Buckhaults P., Farrell C., Meeh P., Markowitz S.D., Willis J., Dawson D., Willson J.K.V. Velculescu V.E.Science 314:268-274(2006) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS [LARGE SCALE ANALYSIS] SER-634; LYS-889 AND CYS-997. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AB014772 mRNA. Translation: BAB19784.1. BC030544 mRNA. Translation: AAH30544.1. BC133704 mRNA. Translation: AAI33705.1. AK001695 mRNA. Translation: BAA91842.1. AY364255 mRNA. Translation: AAQ76814.1. Different initiation. |
| IPI | IPI00023649. IPI00879053. IPI00879170. IPI00879441. |
| RefSeq | NP_001161328.1. NM_001167856.1. NP_060653.3. NM_018183.3. |
| UniGene | Hs.7012. |
3D structure databases | |
| ProteinModelPortal | A3KN83. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | A3KN83. 1 interaction. |
| STRING | 9606.ENSP00000267176. |
PTM databases | |
| PhosphoSite | A3KN83. |
Proteomic databases | |
| PaxDb | A3KN83. |
| PeptideAtlas | A3KN83. |
| PRIDE | A3KN83. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000267176; ENSP00000267176; ENSG00000139697. ENST00000420886; ENSP00000387361; ENSG00000139697. |
| GeneID | 55206. |
| KEGG | hsa:55206. |
| UCSC | uc001uet.2. human. uc001ueu.2. human. uc001uev.2. human. |
Organism-specific databases | |
| CTD | 55206. |
| GeneCards | GC12M123774. |
| HGNC | HGNC:22973. SBNO1. |
| HPA | HPA042388. |
| neXtProt | NX_A3KN83. |
| PharmGKB | PA134967986. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG83182. |
| HOGENOM | HOG000043949. |
| HOVERGEN | HBG108461. |
| InParanoid | A3KN83. |
| OMA | DHKKSKD. |
| OrthoDB | EOG48WC16. |
Gene expression databases | |
| ArrayExpress | A3KN83. |
| Bgee | A3KN83. |
| CleanEx | HS_SBNO1. |
| Genevestigator | A3KN83. |
Family and domain databases | |
| InterPro | IPR026937. SBNO_Helicase_C_dom. IPR026741. SNO-like. [Graphical view] |
| PANTHER | PTHR12706. PTHR12706. 1 hit. |
| Pfam | PF13871. Helicase_C_4. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | SBNO1. human. |
| GenomeRNAi | 55206. |
| NextBio | 59106. |
Entry information
| Entry name | SBNO1_HUMAN | ||||||||
| Accession | Primary (citable) accession number: A3KN83 Secondary accession number(s): Q05C06 Q9NVB2 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 12 Human chromosome 12: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| SIMILARITY comments Index of protein domains and families |

Clusters with
