A3GFH1 (A3GFH1_PICST) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Arginyl-tRNA synthetase EMBL EAZ63345.1

Gene names

Name:	SYR1 EMBL EAZ63345.1
ORF Names:	PICST_38727 EMBL EAZ63345.1

Organism

Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) (Yeast) (Pichia stipitis) [Complete proteome]

Taxonomic identifier

322104 [NCBI]

Taxonomic lineage

Eukaryota › Fungi › Dikarya › Ascomycota › Saccharomycotina › Saccharomycetes › Saccharomycetales › Debaryomycetaceae › Scheffersomyces

Protein attributes

Sequence length	603 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the class-I aminoacyl-tRNA synthetase family. RuleBase RU003489

Ontologies

Keywords
Biological process	Protein biosynthesis RuleBase RU003489
Ligand	ATP-binding RuleBase RU003489 Nucleotide-binding
Molecular function	Aminoacyl-tRNA synthetase RuleBase RU003489 EMBL EAZ63345.1 Ligase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	arginyl-tRNA aminoacylation Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW arginine-tRNA ligase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A3GFH1 [UniParc]. Last modified April 3, 2007. Version 1. Checksum: F95C52844AFCD968	FASTA	603	68,592
	10 20 30 40 50 60 MSTSVHAITD GLSKLGLQQP SAIEASTPDY NIIDVFRNYI TNELHRVSDV DQEIIFSALD 70 80 90 100 110 120 SPNTLDKGDL IVPVPRLRLK GVNPKDKAVE WSEKFEKGKF LSEVKAEGPF LQFFFNKTLL 130 140 150 160 170 180 YNLVIGDALA RKTEYGALPL GLNKKVIVEF SSPNIAKPFH AGHLRSTIIG GFLSNLYEKA 190 200 210 220 230 240 GWNVTRINYL GDWGKQFGLL AVGFERYGSE EKLASDPINH LFEVYVKINQ DITAEGETSP 250 260 270 280 290 300 TNEAARLYFK KMEDGDEEAL KIWKRFRELS IEKYIDTYAR LNIHYDVYSG ESQVPKELMK 310 320 330 340 350 360 MATKIFEEKG LIHEDRGAKL IDLTKFNKKL GKTLVEKSDG TSLYLTRDVG EAMKRYNTYK 370 380 390 400 410 420 FDKMIYVIAS QQDLHCAQFF EVLKQMGFEW VKNMEHVNFG MVLGMSTRKG TVVFLDNILE 430 440 450 460 470 480 ETKEKMHEVM KANEAKYAQI EDPDKIADLV GISAVMIQDM QAKRINNYEF KWDRMTSFEG 490 500 510 520 530 540 DTGPYLQYAH SRLSSVQRKS GYTEEDLATA NYDLLVEPCA ANLIRTLAQY PDTIKKALKT 550 560 570 580 590 600 HEPSTIVTYL FNLTHIVSQC YDILWVAGQE KELAVARLAL YASAKQVLYN GMTLLGLTPV DRM

References

[1]

"Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis." Jeffries T.W., Grigoriev I.V., Grimwood J., Laplaza J.M., Aerts A., Salamov A., Schmutz J., Lindquist E., Dehal P., Shapiro H., Jin Y.-S., Passoth V., Richardson P.M. Nat. Biotechnol. 25:319-326(2007) [PubMed: 17334359] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AAVQ01000001 Genomic DNA. Translation: EAZ63345.1.
RefSeq	XP_001387368.1. XM_001387331.1.
3D structure databases
ProteinModelPortal	A3GFH1.
SMR	A3GFH1. Positions 12-603.
ModBase	Search...
Protein-protein interaction databases
STRING	A3GFH1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4851020.
GenomeReviews	Gene locus SYR1 in contig CM000437_GR.
KEGG	pic:PICST_38727.
Phylogenomic databases
eggNOG	fuNOG06993.
HOGENOM	HBG695395.
OMA	FHEEAEK.
OrthoDB	EOG4FR40V.
Family and domain databases
HAMAP	MF_00123. Arg_tRNA_synth. [Tree]
InterPro	IPR001412. aa-tRNA-synth_I_CS. IPR001278. Arg-tRNA-synth_Ia. IPR015945. Arg-tRNA-synth_Ia_core. IPR005148. Arg-tRNA-synth_N. IPR008909. DALR_anticod-bd. IPR014729. Rossmann-like_a/b/a_fold. IPR009080. tRNAsynth_1a_anticodon-bd. [Graphical view]
Gene3D	G3DSA:3.30.1360.70. Arg-tRNA-synth_Ic_N. 1 hit. G3DSA:3.40.50.620. Rossmann-like_a/b/a_fold. 1 hit.
KO	K01887.
PANTHER	PTHR11956. Arg_tRNA-synt_1c. 1 hit.
Pfam	PF03485. Arg_tRNA_synt_N. 1 hit. PF05746. DALR_1. 1 hit. PF00750. tRNA-synt_1d. 1 hit. [Graphical view]
PRINTS	PR01038. TRNASYNTHARG.
SMART	SM01016. Arg_tRNA_synt_N. 1 hit. SM00836. DALR_1. 1 hit. [Graphical view]
SUPFAM	SSF55190. Arg-tRNA-synth_Ic_N. 1 hit. SSF47323. tRNAsyn_1a_bind. 1 hit.
TIGRFAMs	TIGR00456. ArgS. 1 hit.
PROSITE	PS00178. AA_TRNA_LIGASE_I. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A3GFH1_PICST

Accession

Primary (citable) accession number: A3GFH1

Entry history

Integrated into UniProtKB/TrEMBL:	April 3, 2007
Last sequence update:	April 3, 2007
Last modified:	January 25, 2012
This is version 41 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)