Unreviewed, UniProtKB/TrEMBL A3FH86 (A3FH86_9HIV1)

Names and origin

Protein names

Submitted name:
    Protease EMBL ABN55216.1

Gene names

Name:

pol EMBL ABN55216.1

Organism

Human immunodeficiency virus 1 EMBL ABN55216.1

Taxonomic identifier

11676 [NCBI]

Taxonomic lineage

Viruses › Retro-transcribing viruses › Retroviridae › Orthoretrovirinae › Lentivirus › Primate lentivirus group

Protein attributes

Sequence length	99 AA.
Sequence status	Fragment.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

General annotation (Comments)

Sequence similarities

Contains 1 peptidase A2 domain. Spearmint SPM001995

Ontologies

Keywords
Molecular function	Aspartyl protease RuleBase RU000453V1 Spearmint SPM001969 Hydrolase Protease
Gene Ontology (GO)
Biological process	proteolysis Inferred from electronic annotation. Source: InterPro
Molecular function	aspartic-type endopeptidase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	EMBL ABN55216.1
	Non-terminal residue	99	1	EMBL ABN55216.1

Sequences

	Sequence		Length	Mass (Da)
	A3FH86-1 [UniParc]. Last modified March 20, 2007. Version 1. Checksum: 189F5EE42D82533D	FASTA	99	10,820
	10 20 30 40 50 60 PQITLWQRPL VTIKIGGQLK EALLDTGADD TVLEEMNLPG RWKPKMIGGI GGFIKVRQYD 70 80 90 QILIEICGHK AIGTVLVGPT PVNIIGRNLL TQIGCTLNF

References

[1]	"Use of peripheral blood DNA for genotype antiretroviral resistance testing in drug-naive HIV-infected subjects." Vicenti I., Razzolini F., Saladini F., Romano L., Zazzi M. Clin. Infect. Dis. 44:1657-1661(2007) [PubMed: 17516412] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases

EMBLGenBankDDBJ

EF376542 Genomic DNA. Translation: ABN55216.1.

3D structure databases

PDBPDBe

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2PC0	X-ray	1.40	A	1-99	[»]

SMR

A3FH86. Positions 1-99.

ModBase

Search...

Family and domain databases

InterPro

IPR018061. Pept_A2A_retrovirus_sg.
IPR001995. Peptidase_A2_cat.
IPR001969. Peptidase_aspartic_AS.
IPR009007. Peptidase_aspartic_catalytic.
[Graphical view]

Gene3D

G3DSA:2.40.70.10. Pept_Aspartc_cat. 1 hit.

Pfam

PF00077. RVP. 1 hit.
[Graphical view]

PROSITE

PS50175. ASP_PROT_RETROV. 1 hit.
PS00141. ASP_PROTEASE. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

A3FH86_9HIV1

Accession

Primary (citable) accession number: A3FH86

Entry history

Integrated into UniProtKB/TrEMBL:	March 20, 2007
Last sequence update:	March 20, 2007
Last modified:	July 7, 2009
This is version 18 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)