Unreviewed, UniProtKB/TrEMBL A3FC05 (A3FC05_9HIV1)

Names and origin

Protein names

Submitted name:
    Protease EMBL ABN47662.1

Gene names

Name:

pol EMBL ABN47662.1

Organism

Human immunodeficiency virus 1 EMBL ABN47662.1

Taxonomic identifier

11676 [NCBI]

Taxonomic lineage

Viruses › Retro-transcribing viruses › Retroviridae › Orthoretrovirinae › Lentivirus › Primate lentivirus group

Protein attributes

Sequence length	99 AA.
Sequence status	Fragment.
Sequence processing	The displayed sequence is not processed.
Protein existence	Predicted.

General annotation (Comments)

Sequence similarities

Contains 1 peptidase A2 domain. Spearmint SPM001995

Ontologies

Keywords
Molecular function	Aspartyl protease RuleBase RU000453V1 Spearmint SPM001969 Hydrolase Protease
Gene Ontology (GO)
Biological process	proteolysis Inferred from electronic annotation. Source: InterPro
Molecular function	aspartic-type endopeptidase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	EMBL ABN47662.1
	Non-terminal residue	99	1	EMBL ABN47662.1

Sequences

	Sequence		Length	Mass (Da)
	A3FC05-1 [UniParc]. Last modified March 20, 2007. Version 1. Checksum: 189F5EE42D82533D	FASTA	99	10,820
	10 20 30 40 50 60 PQITLWQRPL VTIKIGGQLK EALLDTGADD TVLEEMNLPG RWKPKMIGGI GGFIKVRQYD 70 80 90 QILIEICGHK AIGTVLVGPT PVNIIGRNLL TQIGCTLNF

References

[1]

"Evidence of differential HLA class I-mediated viral evolution in functional and accessory/regulatory genes of HIV-1." Brumme Z.L., Brumme C.J., Heckerman D., Korber B.T., Daniels M., Carlson J., Kadie C., Bhattacharya T., Chui C., Szinger J., Mo T., Hogg R.S., Montaner J.S., Frahm N., Brander C., Walker B.D., Harrigan P.R. PLoS Pathog. 3:e94-e94(2007) [PubMed: 17616974] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: BCCFE_HOMER_HIV_PR_1251 EMBL ABN47662.1.

[2]

"In vivo HLA class-I-associated polymorphisms in HIV-1 identified through a genetic association approach correlate with clinical markers of immune decline." Brumme Z.L., Brumme C.J., Heckerman D., Korber B.T., Daniels M., Carlson J., Kadie C., Bhattacharya T., Chui C., Mo T., Hogg R.S., Montaner J.S.G., Frahm N., Brander C., Walker B.D. Submitted (JAN-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: BCCFE_HOMER_HIV_PR_1251 EMBL ABN47662.1.

Cross-references

Sequence databases
EMBLGenBankDDBJ	EF368561 Genomic DNA. Translation: ABN47662.1.
3D structure databases
SMR	A3FC05. Positions 1-99.
ModBase	Search...
Family and domain databases
InterPro	IPR018061. Pept_A2A_retrovirus_sg. IPR001995. Peptidase_A2_cat. IPR001969. Peptidase_aspartic_AS. IPR009007. Peptidase_aspartic_catalytic. [Graphical view]
Gene3D	G3DSA:2.40.70.10. Pept_Aspartc_cat. 1 hit.
Pfam	PF00077. RVP. 1 hit. [Graphical view]
PROSITE	PS50175. ASP_PROT_RETROV. 1 hit. PS00141. ASP_PROTEASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A3FC05_9HIV1

Accession

Primary (citable) accession number: A3FC05

Entry history

Integrated into UniProtKB/TrEMBL:	March 20, 2007
Last sequence update:	March 20, 2007
Last modified:	June 16, 2009
This is version 13 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)