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A3DPG6 (A3DPG6_STAMF) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Smar_1436 EMBL ABN70526.1
OrganismStaphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) [Complete proteome] [HAMAP] EMBL ABN70526.1
Taxonomic identifier399550 [NCBI]
Taxonomic lineageArchaeaCrenarchaeotaThermoproteiDesulfurococcalesDesulfurococcaceaeStaphylothermus

Protein attributes

Sequence length381 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABN70526.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A3DPG6 [UniParc].

Last modified March 20, 2007. Version 1.
Checksum: AC79EC666FD2B103

FASTA38144,767
        10         20         30         40         50         60 
MDENELVNKL SDALGIEYEK LSKHIGRSIR LMKYGELNYV VFRRDLLGYR EGTTILLGEE 

        70         80         90        100        110        120 
PLIVHGYPSI QRLAFIEGVS KHMIDNVVVE EKMNGYNVRV VYYMNNIYAI TRGGYICPYT 

       130        140        150        160        170        180 
TARIRKLYSK NIKLAYQEYP DTILVGEVVG TENPYVIYDY PEARGFDYFI FDTMKKDKLQ 

       190        200        210        220        230        240 
PLRIRDEIAE KYSLKTVRIL DIINKRDIDR LKTIINRLEK ERREGVVLKD PYQRVPPLKY 

       250        260        270        280        290        300 
TTIYINIRDI WEGMRYPFDE GRGYLFSRIV RLIAQGYEYD WNNTELDRIA LKLGRAILEP 

       310        320        330        340        350        360 
AINSLKKRAN GEIIASKYTL VFPSEDDLSK YIEYAESIGM DFIFRVVEKR EDGCIVVELF 

       370        380 
KMKETHNIYT KMLKTGYSPL D 

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References

[1]"The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota."
Anderson I.J., Dharmarajan L., Rodriguez J., Hooper S., Porat I., Ulrich L.E., Elkins J.G., Mavromatis K., Sun H., Land M., Lapidus A., Lucas S., Barry K., Huber H., Zhulin I.B., Whitman W.B., Mukhopadhyay B., Woese C., Bristow J., Kyrpides N.
BMC Genomics 10:145-145(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 43588 / DSM 3639 / F1.
[2]"Complete genome sequence of Staphylothermus marinus Stetter and Fiala 1986 type strain F1."
Anderson I.J., Sun H., Lapidus A., Copeland A., Glavina Del Rio T., Tice H., Dalin E., Lucas S., Barry K., Land M., Richardson P., Huber H., Kyrpides N.C.
Stand. Genomic Sci. 1:183-188(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 43588 / DSM 3639 / F1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000575 Genomic DNA. Translation: ABN70526.1.
RefSeqYP_001041434.1. NC_009033.1.

3D structure databases

ProteinModelPortalA3DPG6.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING399550.Smar_1436.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABN70526; ABN70526; Smar_1436.
GeneID4906715.
KEGGsmr:Smar_1436.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1423.
HOGENOMHOG000224394.
KOK07468.
OMAEEKMNGY.

Enzyme and pathway databases

BioCycSMAR399550:GHK2-1489-MONOMER.

Family and domain databases

InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PRINTSPR01048. Y414FAMILY.
TIGRFAMsTIGR01209. TIGR01209. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA3DPG6_STAMF
AccessionPrimary (citable) accession number: A3DPG6
Entry history
Integrated into UniProtKB/TrEMBL: March 20, 2007
Last sequence update: March 20, 2007
Last modified: May 14, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)