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A3DNL9 (A3DNL9_STAMF) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 48. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Glycyl-tRNA synthetase EMBL ABN70229.1
EC=6.1.1.14 EMBL ABN70229.1
Gene names
Ordered Locus Names:Smar_1134
OrganismStaphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) [Complete proteome] [HAMAP]
Taxonomic identifier399550 [NCBI]
Taxonomic lineageArchaea › Crenarchaeota › Thermoprotei › Desulfurococcales › Desulfurococcaceae › Staphylothermus ›

Protein attributes

Sequence length588 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the class-II aminoacyl-tRNA synthetase family. RuleBase RU003746

Ontologies

Keywords
   Molecular functionAminoacyl-tRNA synthetase EMBL ABN70229.1
Ligase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processglycyl-tRNA aminoacylation

Inferred from electronic annotation. Source: InterPro

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

glycine-tRNA ligase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A3DNL9 [UniParc].

Last modified March 20, 2007. Version 1.
Checksum: BD5CA2948C21AEFD

FASTA58868,350
        10         20         30         40         50         60 
MVNKQVDKYQ ILLDLGKRRG LFWLSYEIYG GVAGFYDFGP NGVLIKRNII NEWLNNLVYN 

        70         80         90        100        110        120 
TGLVLEIETP IITPRIVLKA SGHEDHFTDP ITECTRCGRV FRADHLIEEA LGIRAEGLSM 

       130        140        150        160        170        180 
DELWKLIKEH NIRCPECGGE LTKPKPALLL FKTEIGPYKG SPAYLRPETA QGMFVSFKHV 

       190        200        210        220        230        240 
LNIARNKLPL GIAQIGRVGR NEISPRQGLL RLREFTIMEL EFFFDPEKAF EETMKYMTDE 

       250        260        270        280        290        300 
IRNEKLNIIT AEDKLRGEEK TRKYTAIELI ENKIVKNPWM AYWMALGNIF LRKLGISSEK 

       310        320        330        340        350        360 
IRFDEKLPEE KAHYSEQTFD QEVYTEKYGW IEVAGYSYRT TYDLSRHIKY SKADLTYFKK 

       370        380        390        400        410        420 
YDKPIKKKIV KIVPNPKKIR EIVGKDIGTV MKKLNEIPAE KILEELNKNN YVEISNYKLS 

       430        440        450        460        470        480 
RECFIISEKE ETIHGEKIIP HVVEPSFGLE RIFYVVLENS ISIARDGRIV LKLPPRIAPY 

       490        500        510        520        530        540 
KVAVFPLVTG NKPEHKKMVS IARQVYRALL ENNILAYYDE EGSIGRRYAR ADEIGIPYAI 

       550        560        570        580 
TIDYQTLEDE TVTLRDRDSR EQIRLHIQEL HDKLISLLGL KKEFNIEF

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References

[1]"The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota."
Anderson I.J., Dharmarajan L., Rodriguez J., Hooper S., Porat I., Ulrich L.E., Elkins J.G., Mavromatis K., Sun H., Land M., Lapidus A., Lucas S., Barry K., Huber H., Zhulin I.B., Whitman W.B., Mukhopadhyay B., Woese C., Bristow J., Kyrpides N.
BMC Genomics 10:145-145(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 43588 / DSM 3639 / F1.
[2]"Complete genome sequence of Staphylothermus marinus Stetter and Fiala 1986 type strain F1."
Anderson I.J., Sun H., Lapidus A., Copeland A., Glavina Del Rio T., Tice H., Dalin E., Lucas S., Barry K., Land M., Richardson P., Huber H., Kyrpides N.C.
Stand. Genomic Sci. 1:183-188(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 43588 / DSM 3639 / F1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000575 Genomic DNA. Translation: ABN70229.1.
RefSeqYP_001041137.1. NC_009033.1.

3D structure databases

ProteinModelPortalA3DNL9.
ModBaseSearch...

Protein-protein interaction databases

STRING399550.Smar_1134.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABN70229; ABN70229; Smar_1134.
GeneID4906816.
KEGGsmr:Smar_1134.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0423.
HOGENOMHOG000242015.
KOK01880.
OMAVFIASGH.
ProtClustDBPRK04173.

Enzyme and pathway databases

BioCycSMAR399550:GHK2-1179-MONOMER.

Family and domain databases

Gene3D3.40.50.800. 1 hit.
InterProIPR002314. aa-tRNA-synt_IIb_cons-dom.
IPR006195. aa-tRNA-synth_II.
IPR004154. Anticodon-bd.
IPR027031. Gly-tRNA_synthase/POLG2.
IPR002315. tRNA-synt_gly.
[Graphical view]
PANTHERPTHR10745. PTHR10745. 1 hit.
PfamPF03129. HGTP_anticodon. 1 hit.
PF00587. tRNA-synt_2b. 1 hit.
[Graphical view]
PRINTSPR01043. TRNASYNTHGLY.
SUPFAMSSF52954. Anticodon_bd. 1 hit.
TIGRFAMsTIGR00389. glyS_dimeric. 1 hit.
PROSITEPS50862. AA_TRNA_LIGASE_II. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA3DNL9_STAMF
AccessionPrimary (citable) accession number: A3DNL9
Entry history
Integrated into UniProtKB/TrEMBL: March 20, 2007
Last sequence update: March 20, 2007
Last modified: May 1, 2013
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info