A3DL07 (A3DL07_STAMF) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Arginine decarboxylase RuleBase RU003740
EC=4.1.1.19 RuleBase RU003740

Gene names

Ordered Locus Names:

Smar_0204

Organism

Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) [Complete proteome] [HAMAP]

Taxonomic identifier

399550 [NCBI]

Taxonomic lineage

Archaea › Crenarchaeota › Thermoprotei › Desulfurococcales › Desulfurococcaceae › Staphylothermus

Protein attributes

Sequence length	589 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-arginine = agmatine + CO2. RuleBase RU003740
Cofactor	Magnesium By similarity. RuleBase RU003740
Sequence similarities	Belongs to the Orn/Lys/Arg decarboxylase class-II family. RuleBase RU003737

Ontologies

Keywords
Biological process	Spermidine biosynthesis RuleBase RU003740
Molecular function	Decarboxylase RuleBase RU003740 Lyase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	arginine catabolic process Inferred from electronic annotation. Source: InterPro spermidine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	arginine decarboxylase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A3DL07 [UniParc]. Last modified March 20, 2007. Version 1. Checksum: 256AF6A5E8AC7498	FASTA	589	67,803
	10 20 30 40 50 60 MVWGKGLARR LYGLTGVVWS KYLDIDERGR LIVKLKGYKI DIAKLVSDKQ LPGAHIRILP 70 80 90 100 110 120 IIRYMMDQVY EAFMEAFRKF GYKGAFKPVY PLKSNSTPIV VDTIWRYGIK YSWGFNAGTY 130 140 150 160 170 180 PEVKLISKYI NEKPRLLVVD GIKDNKLLDL LSKMCDSWEI IVDIESMRDA DLLSKYQDLN 190 200 210 220 230 240 IGLRVKVTSK SSGLWSHSSG LDSKFGLLIN TLDEMVEKHP WVPNRTVLLH VHAGSQITDK 250 260 270 280 290 300 NRLEDIIRET IILYNNLVKT GFKNIRYIDF GGGLAYPYIE ASNHVFSANY SLNEYAEILV 310 320 330 340 350 360 KELVKSAENT PDIVFEGGRY IVAPHRITVT KIIDTRPYST SDRGETSYPI VEEIKNTENI 370 380 390 400 410 420 KELVYVSRKA REVITRLMLK FPINIESRRI LEKLLTSINE AITSKAYEII HRDNDKALEE 430 440 450 460 470 480 LIKTPNYVLE ELVSPTRRFF ASFSLFSHLP DTIIADQYFK IIPLQRLNEK PEVLGVISDL 490 500 510 520 530 540 TCDSMGEYSS FITFLPNNIE YETEDLFTSL DHKLMFIPGK TLRLKGVPLH IPRKNEDYYI 550 560 570 580 AFLDTGAYQD MLSMNHNLLN GYPEIIIDII NDNLKIIYEN LESAENYPL

References

[1]

"Complete genome sequence of Staphylothermus marinus Stetter and Fiala 1986 type strain F1." Anderson I.J., Sun H., Lapidus A., Copeland A., Glavina Del Rio T., Tice H., Dalin E., Lucas S., Barry K., Land M., Richardson P., Huber H., Kyrpides N.C. Stand. Genomic Sci. 1:183-188(2009) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

[2]

"The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota." Anderson I.J., Dharmarajan L., Rodriguez J., Hooper S., Porat I., Ulrich L.E., Elkins J.G., Mavromatis K., Sun H., Land M., Lapidus A., Lucas S., Barry K., Huber H., Zhulin I.B., Whitman W.B., Mukhopadhyay B., Woese C., Bristow J., Kyrpides N. BMC Genomics 10:145-145(2009) [PubMed: 19341479] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000575 Genomic DNA. Translation: ABN69317.1.
RefSeq	YP_001040225.1. NC_009033.1.
3D structure databases
ProteinModelPortal	A3DL07.
ModBase	Search...
Protein-protein interaction databases
STRING	A3DL07.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4907299.
GenomeReviews	Gene locus Smar_0204 in contig CP000575_GR.
KEGG	smr:Smar_0204.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	arNOG18029.
HOGENOM	HBG460797.
OMA	LICNGYK.
PhylomeDB	A3DL07.
ProtClustDB	CLSK2399448.
Enzyme and pathway databases
BioCyc	SMAR399550:SMAR_0204-MONOMER.
Family and domain databases
InterPro	IPR009006. Ala_racemase/Decarboxylase_C. IPR002985. Arg_decrbxlase. IPR022643. De-COase2_C. IPR022644. De-COase2_N. IPR022653. De-COase2_pyr-phos_BS. IPR000183. Orn/DAP/Arg_de-COase. [Graphical view]
Gene3D	G3DSA:2.40.37.10. Ala_racemase/Decarboxylase_C. 3 hits.
KO	K01585.
PANTHER	PTHR11482:SF3. Arg_decrbxlase. 1 hit.
Pfam	PF02784. Orn_Arg_deC_N. 1 hit. PF00278. Orn_DAP_Arg_deC. 1 hit. [Graphical view]
PRINTS	PR01180. ARGDCRBXLASE. PR01179. ODADCRBXLASE.
PROSITE	PS00878. ODR_DC_2_1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A3DL07_STAMF

Accession

Primary (citable) accession number: A3DL07

Entry history

Integrated into UniProtKB/TrEMBL:	March 20, 2007
Last sequence update:	March 20, 2007
Last modified:	November 16, 2011
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)