Metallophosphoesterase - Clostridium thermocellum (strain ATCC 27405 / DSM 1237)

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A3DJ38 (A3DJ38_CLOTH) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 48. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
Metallophosphoesterase EMBL ABN53967.1

Gene names

Ordered Locus Names:

Cthe_2768

Organism

Clostridium thermocellum (strain ATCC 27405 / DSM 1237) [Complete proteome] [HAMAP] EMBL ABN53967.1

Taxonomic identifier

Taxonomic lineage

Bacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium ›

Protein attributes

Sequence length	870 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	3D-structure PDB 3TY5 PDB 3TY8 PDB 3TY9 PDB 4DRF PDB 4E6N PDB 4GP6 PDB 4GP7 Complete proteome
Gene Ontology (GO)
Molecular_function	hydrolase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

A3DJ38 [UniParc].

Last modified March 20, 2007. Version 1.
Checksum: 11CA5878DD2919E9
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870

98,776

        10         20         30         40         50         60 
MKLTIPELSL VVLIGSSGSG KSTFAKKHFK PTEVISSDFC RGLVSDDEND QTVTGAAFDV 

        70         80         90        100        110        120 
LHYIVSKRLQ LGKLTVVDAT NVQESARKPL IEIAKDYHCF PVAVVFNLPE KVCQERNKNR 

       130        140        150        160        170        180 
TDRQVEEYVI RKHTQQLKKS IKGLQREGFR YVYILNSPEE VEEVVFERQP LWNNKKDEHG 

       190        200        210        220        230        240 
PFDIIGDIHG CYDELKMLLE KLGYLIEEVE GGVGSGKYRV THPEGRKVLF LGDLVDRGPK 

       250        260        270        280        290        300 
ITEVLKLVMG MVKSGIALCV PGNHDVKLLR KLNGRDVQIT HGLDRTLEQL AKEPQEFIEE 

       310        320        330        340        350        360 
VKAFIDGLVS HYVLDDGKLV VAHAGMKEEF QGRGSGKVRE FALYGETTGE TDEYGLPVRY 

       370        380        390        400        410        420 
DWASDYRGKA LVVYGHTPQA EVLKVNNTIN IDTGCVFGGK LTAYRYPERE IVDVKALKTY 

       430        440        450        460        470        480 
YEPAKPFLPK EDMAERFEAR TDNDILDIND VLGKKIITTR LMSSITIHEE NSIAALEVMS 

       490        500        510        520        530        540 
RFAADPHWLI YLPPTMSPCE TSKKEGMLEH PIEAFEYFRT RGVGKVVCEQ KHMGSRAVVI 

       550        560        570        580        590        600 
VCKDSQVAEK RFGVLDGTAG ICYTRTGRHF FDDMQLEAEL IDRVRKVLDK SGFWGDFNTD 

       610        620        630        640        650        660 
WVCLDCELMP WSAKAQKLLE EQYSAVGISG RVVLDEAVKL LKQASLNKTV SFDVSRQTSG 

       670        680        690        700        710        720 
KNADINELLQ RFTERSEMMQ KYVEAYRKYC WPVNSIDDLK LAPFHILATE GKVHSDKNHI 

       730        740        750        760        770        780 
WHMDTIAKYC TQDDSLIMAT NHILVDVTDA ESVDKGIKWW EDLTASGGEG MVVKPYDFIV 

       790        800        810        820        830        840 
KNGRELLQPA VKCRGREYLR IIYGPEYTMD ENIERLRNRA VGKKRSLALR EFSLGMEALE 

       850        860        870 
RFVRNEPLYR VHECVFGVLA LESEPVDPRL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete sequence of Clostridium thermocellum ATCC 27405." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. Richardson P. Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 27405 / DSM 1237.
[2]	"The adenylyltransferase domain of bacterial Pnkp defines a unique RNA ligase family." Smith P., Wang L.K., Nair P.A., Shuman S. Proc. Natl. Acad. Sci. U.S.A. 109:2296-2301(2012) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.40 ANGSTROMS) OF 479-870.
[3]	"Molecular basis of bacterial protein Hen1 activating the ligase activity of bacterial protein Pnkp for RNA repair." Wang P., Chan C.M., Christensen D., Zhang C., Selvadurai K., Huang R.H. Proc. Natl. Acad. Sci. U.S.A. 109:13248-13253(2012) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.39 ANGSTROMS) OF 445-870.
[4]	"Structure and mechanism of the polynucleotide kinase component of the bacterial Pnkp-Hen1 RNA repair system." Wang L.K., Das U., Smith P., Shuman S. RNA 18:2277-2286(2012) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS) OF 1-170.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CP000568 Genomic DNA. Translation: ABN53967.1.

RefSeq

YP_001039160.1. NC_009012.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3TY5	X-ray	2.40	A/B	479-870	[»]
3TY8	X-ray	2.60	A/B	479-870	[»]
3TY9	X-ray	3.12	A/B/C/D	479-870	[»]
4DRF	X-ray	2.60	A/C	445-870	[»]
4E6N	X-ray	2.39	A/C	445-870	[»]
4GP6	X-ray	2.10	A/B	1-170	[»]
4GP7	X-ray	2.00	A/B	1-170	[»]

ProteinModelPortal

ModBase

Protein-protein interaction databases

STRING

203119.Cthe_2768.

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblBacteria

ABN53967; ABN53967; Cthe_2768.

GeneID

KEGG

PATRIC

19519588. VBICloThe47081_2947.

Organism-specific databases

CMR

Phylogenomic databases

eggNOG

HOGENOM

KO

OMA

ProtClustDB

Enzyme and pathway databases

BioCyc

CTHE203119:GIW8-2869-MONOMER.

Family and domain databases

InterPro

IPR004843. Metallo_PEstase_dom.
IPR024028. PNKP_bac.
IPR006186. Ser/Thr-sp_prot-phosphatase.
[Graphical view]

Pfam

PF00149. Metallophos. 1 hit.
[Graphical view]

PRINTS

PR00114. STPHPHTASE.

SMART

SM00156. PP2Ac. 1 hit.
[Graphical view]

TIGRFAMs

TIGR04075. bacter_Pnkp. 1 hit.

ProtoNet

Entry information

Entry name

A3DJ38_CLOTH

Accession

Primary (citable) accession number: A3DJ38

Entry history

Integrated into UniProtKB/TrEMBL:	March 20, 2007
Last sequence update:	March 20, 2007
Last modified:	May 1, 2013
This is version 48 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info