A3DGE2 (A3DGE2_CLOTH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Peptidoglycan-binding lysin domain-containing protein EMBL ABN53021.1

Gene names

Ordered Locus Names:

Cthe_1800

Organism

Clostridium thermocellum (strain ATCC 27405 / DSM 1237) [Complete proteome] [HAMAP]

Taxonomic identifier

203119 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium

Protein attributes

Sequence length	503 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro cell wall macromolecule catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	cation binding Inferred from electronic annotation. Source: InterPro hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A3DGE2 [UniParc]. Last modified March 20, 2007. Version 1. Checksum: 26D9555CE5110B66	FASTA	503	56,871
	10 20 30 40 50 60 MWYTVQPGDS LYTISQRFGV TIAQIKSANQ LTSDIIYVGQ RLYIPIGIQA PVVYTVRPGD 70 80 90 100 110 120 TLYLIARRYN TTVDSLMALN NLSSTELRIG QQLTIPLYTE AVVNVGTANI RRGPGTNFGI 130 140 150 160 170 180 ITRMTNGARL PVIGFSNNWY QVRLYNGREG WISGSIVTRN VYSGRRPITG VLGFYTLEEG 190 200 210 220 230 240 PTLPSSFTSF ANNTGQLSST ALFMFRISAA NPTTIEKFGE FTDQDVRNLV AIAHRNNVKI 250 260 270 280 290 300 MPVVHNLLYR PGGTTLAKNV VKTLVSDPRN RNAFALNLVN LIERYGFDGV NIDIEDVFIE 310 320 330 340 350 360 DSDNLSLLYT EISEVLRPRG YFFSASVPSR VSDEPFNPFS DPFNYSVIGR AVDEFVVMLY 370 380 390 400 410 420 NEFGWPGSPP GPAVTIGWME RVLRYTMSKM PRDKIMAAVS VFGFDFNLTT GRNTYVTYQS 430 440 450 460 470 480 AINLARRYNS EIIFNEERQT PMFTYRDAQG NQHEVWFEDA RSLRSKIQLA WELGIKGVAL 490 500 WRLGMEDPNI WPMLRNEVVV RKF

References

[1]

"Complete sequence of Clostridium thermocellum ATCC 27405." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Wu J.H.D., Newcomb M., Richardson P. Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 27405 / DSM 1237.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000568 Genomic DNA. Translation: ABN53021.1.
RefSeq	YP_001038214.1. NC_009012.1.
3D structure databases
ProteinModelPortal	A3DGE2.
ModBase	Search...
Protein-protein interaction databases
STRING	A3DGE2.
Protein family/group databases
CAZy	CBM50. Carbohydrate-Binding Module Family 50. GH18. Glycoside Hydrolase Family 18.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4809784.
GenomeReviews	Gene locus Cthe_1800 in contig CP000568_GR.
KEGG	cth:Cthe_1800.
NMPDR	fig|203119.1.peg.2944.
PATRIC	19517443. VBICloThe47081_1900.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3858.
HOGENOM	HBG418928.
OMA	FIMAYDW.
ProtClustDB	CLSK965102.
Family and domain databases
InterPro	IPR001223. Glyco_hydro18cat. IPR001579. Glyco_hydro_18_chit_AS. IPR013781. Glyco_hydro_subgr_catalytic. IPR017853. Glycoside_hydrolase_SF. IPR018392. Peptidoglycan-bd_lysin. IPR002482. Peptidoglycan-bd_Lysin_subgr. IPR003646. SH3-like_bac. IPR013247. SH3_3. [Graphical view]
Gene3D	G3DSA:3.20.20.80. Glyco_hydro_cat. 2 hits.
Pfam	PF00704. Glyco_hydro_18. 1 hit. PF01476. LysM. 2 hits. PF08239. SH3_3. 1 hit. [Graphical view]
SMART	SM00257. LysM. 2 hits. SM00287. SH3b. 1 hit. [Graphical view]
SUPFAM	SSF51445. Glyco_hydro_cat. 1 hit.
PROSITE	PS01095. CHITINASE_18. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A3DGE2_CLOTH

Accession

Primary (citable) accession number: A3DGE2

Entry history

Integrated into UniProtKB/TrEMBL:	March 20, 2007
Last sequence update:	March 20, 2007
Last modified:	December 14, 2011
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)