A3DEX4 (A3DEX4_CLOTH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Carbohydrate binding family 6 EMBL ABN52503.1

Gene names

Ordered Locus Names:

Cthe_1271

Organism

Clostridium thermocellum (strain ATCC 27405 / DSM 1237) [Complete proteome] [HAMAP]

Taxonomic identifier

203119 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium

Protein attributes

Sequence length	679 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	polysaccharide catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	carbohydrate binding Inferred from electronic annotation. Source: InterPro hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A3DEX4 [UniParc]. Last modified March 20, 2007. Version 1. Checksum: B549D5E31BA0C58F	FASTA	679	74,561
	10 20 30 40 50 60 MPKKLKKIIK LCSMVFVIGI LTLLLPEKGA ADYPIFSQRF TADPAAVVYN GRLYIYCSHD 70 80 90 100 110 120 SDATPGQSTY NIPDITCIST DDLKNWTDHG EVFNAKRDSR WASVSWAPSI VYRNNKFYLY 130 140 150 160 170 180 YGNGGNGIGV AVSDSPTGPF KDPLPGPLVS WNTPGVQPAQ NMWLFDPGVF VDDDGQAYMY 190 200 210 220 230 240 FGGNGQNNIR VIKLGNDMIS TVGSAMTMSA PRFFEAAYMH KYNGKYYFSY ASDFSQGASK 250 260 270 280 290 300 IEYMMSDKPT TGFQYKGVIL PQPPDNYSNN NHHAIVEYKG NWYVVYHNRT VAKQRGLDPV 310 320 330 340 350 360 YQRNVCIDQM FYNADGTIKQ VVPTVDGLKQ LKYVDPYTKN LAVTMHKESG IETEECSEGG 370 380 390 400 410 420 RNVAFIENGD WIQVKGVDFG NVGPTSFEAR VASATNGGNI EIRLDSPTGT LIGTCKVEGT 430 440 450 460 470 480 GDWQKWVTKT CSVSKVTGVH DLFFRFTGGS GYLFNFSWWK FNSDATPTPT PPPQPSTVPV 490 500 510 520 530 540 TERSAFSKIE VEDFNDIKSS TIQKIGTPNG GSGIGYIENG DWLAYKNIDF GNGATTFKAL 550 560 570 580 590 600 VASTLSPNIE LRLDSPTGTL IGTLKVAATG GFNAYEEQSC NISKVTGKHD LYLVFSGAVN 610 620 630 640 650 660 IDWFTFGGSS GIIKRGDTNS DGKINSTDVT ALKRHLLRVT QLTGDNLANA DVNGDGNVNS 670 TDLLLLKRYI LGEIENFPI

References

[1]

"Complete sequence of Clostridium thermocellum ATCC 27405." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Wu J.H.D., Newcomb M., Richardson P. Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 27405 / DSM 1237.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000568 Genomic DNA. Translation: ABN52503.1.
RefSeq	YP_001037696.1. NC_009012.1.
3D structure databases
ProteinModelPortal	A3DEX4.
SMR	A3DEX4. Positions 486-606, 616-678.
ModBase	Search...
Protein-protein interaction databases
STRING	A3DEX4.
Protein family/group databases
CAZy	CBM6. Carbohydrate-Binding Module Family 6. GH43. Glycoside Hydrolase Family 43.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4809776.
GenomeReviews	Gene locus Cthe_1271 in contig CP000568_GR.
KEGG	cth:Cthe_1271.
NMPDR	fig|203119.1.peg.2201.
PATRIC	19516321. VBICloThe47081_1341.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	NOG26186.
HOGENOM	HBG585375.
OMA	WTDHGEV.
Family and domain databases
InterPro	IPR016134. Cellulos_enz_dockerin_1. IPR002105. Cellulos_enz_dockerin_1_Ca-bd. IPR006584. Cellulose-bd_IV. IPR005084. CMB_fam6. IPR018242. Dockerin_1. IPR018247. EF_Hand_1_Ca_BS. IPR008979. Galactose-bd-like. IPR006710. Glyco_hydro_43. IPR023296. Glyco_hydro_43_beta-prop. [Graphical view]
Gene3D	G3DSA:1.10.1330.10. Cellulos_enz_dockerin_1. 1 hit. G3DSA:2.115.10.20. Glyco_hydro_43_beta-prop. 1 hit.
PANTHER	PTHR22925. Glyco_hydro_43. 1 hit.
Pfam	PF03422. CBM_6. 2 hits. PF00404. Dockerin_1. 2 hits. PF04616. Glyco_hydro_43. 1 hit. [Graphical view]
SMART	SM00606. CBD_IV. 2 hits. [Graphical view]
SUPFAM	SSF63446. Cellulos_enz_dockerin_1. 1 hit. SSF49785. Gal_bind_like. 2 hits. SSF75005. Glyco_hydro_43_beta-prop. 1 hit.
PROSITE	PS51175. CBM6. 2 hits. PS00448. CLOS_CELLULOSOME_RPT. 1 hit. PS00018. EF_HAND_1. 2 hits. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A3DEX4_CLOTH

Accession

Primary (citable) accession number: A3DEX4

Entry history

Integrated into UniProtKB/TrEMBL:	March 20, 2007
Last sequence update:	March 20, 2007
Last modified:	December 14, 2011
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)