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Protein

50S ribosomal protein L32

Gene

rpmF

Organism
Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium thermocellum)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciCTHE203119:GIW8-1062-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L32UniRule annotation
Gene namesi
Name:rpmFUniRule annotation
Ordered Locus Names:Cthe_1026
OrganismiClostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium thermocellum)
Taxonomic identifieri203119 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesRuminococcaceaeRuminiclostridium
ProteomesiUP000002145 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 666650S ribosomal protein L32PRO_0000296451Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi203119.Cthe_1026.

Structurei

3D structure databases

ProteinModelPortaliA3DE79.
SMRiA3DE79. Positions 3-52.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L32P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0333.
HOGENOMiHOG000040268.
KOiK02911.
OMAiGTYNRRQ.
OrthoDBiEOG6VMTT4.

Family and domain databases

HAMAPiMF_00340. Ribosomal_L32.
InterProiIPR002677. Ribosomal_L32p.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PfamiPF01783. Ribosomal_L32p. 1 hit.
[Graphical view]
SUPFAMiSSF57829. SSF57829. 1 hit.
TIGRFAMsiTIGR01031. rpmF_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

A3DE79-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MANPKRKWSK ARTGKRRSQW KLTVPNLVEC PHCHSLKLLH RVCKECGHYT
60
VRHKGERKSI EVLSVE
Length:66
Mass (Da):7,762
Last modified:March 20, 2007 - v1
Checksum:iBD32826287E4033F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000568 Genomic DNA. Translation: ABN52258.1.
RefSeqiWP_003515606.1. NC_009012.1.
YP_001037451.1. NC_009012.1.

Genome annotation databases

EnsemblBacteriaiABN52258; ABN52258; Cthe_1026.
KEGGicth:Cthe_1026.
PATRICi19515785. VBICloThe47081_1078.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000568 Genomic DNA. Translation: ABN52258.1.
RefSeqiWP_003515606.1. NC_009012.1.
YP_001037451.1. NC_009012.1.

3D structure databases

ProteinModelPortaliA3DE79.
SMRiA3DE79. Positions 3-52.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi203119.Cthe_1026.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABN52258; ABN52258; Cthe_1026.
KEGGicth:Cthe_1026.
PATRICi19515785. VBICloThe47081_1078.

Phylogenomic databases

eggNOGiCOG0333.
HOGENOMiHOG000040268.
KOiK02911.
OMAiGTYNRRQ.
OrthoDBiEOG6VMTT4.

Enzyme and pathway databases

BioCyciCTHE203119:GIW8-1062-MONOMER.

Family and domain databases

HAMAPiMF_00340. Ribosomal_L32.
InterProiIPR002677. Ribosomal_L32p.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PfamiPF01783. Ribosomal_L32p. 1 hit.
[Graphical view]
SUPFAMiSSF57829. SSF57829. 1 hit.
TIGRFAMsiTIGR01031. rpmF_bact. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372.

Entry informationi

Entry nameiRL32_CLOTH
AccessioniPrimary (citable) accession number: A3DE79
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 24, 2007
Last sequence update: March 20, 2007
Last modified: May 27, 2015
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.