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A3DD67 (A3DD67_CLOTH) Unreviewed, UniProtKB/TrEMBL

Last modified December 11, 2013. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Cthe_0661 EMBL ABN51896.1
OrganismClostridium thermocellum (strain ATCC 27405 / DSM 1237) [Complete proteome] [HAMAP] EMBL ABN51896.1
Taxonomic identifier203119 [NCBI]
Taxonomic lineageBacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridium

Protein attributes

Sequence length571 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 3232 Potential EMBL ABN51896.1
Chain33 – 571539 Potential EMBL ABN51896.1
PRO_5000225106

Regions

Region416 – 4205Galactose binding PDB 3VSZ PDB 3VT1
Region431 – 4344Galactose binding PDB 3VSZ PDB 3VT1

Sites

Binding site4381Galactose PDB 3VSZ PDB 3VT1

Sequences

Sequence LengthMass (Da)Tools
A3DD67 [UniParc].

Last modified March 20, 2007. Version 1.
Checksum: 5034D6F32BBA3CA4

FASTA57163,895
        10         20         30         40         50         60 
MVKKNVGLRF LSILILMALL IGNVQSFNVA AAEGVIVNGT QFKDTSGNVI HAHGGGMLKH 

        70         80         90        100        110        120 
GDYYYWYGEY RDDSNLFLGV SCYRSKDLVN WEYRGEVLSR NSAPELNHCN IERPKVMYNA 

       130        140        150        160        170        180 
STGEFVMWMH WENGINYGQA RAAVAYSKTP DGKFTYIRSF RPMQDTGVMD HGLPGYMSRD 

       190        200        210        220        230        240 
CNVFVDTDGK GYFISAANEN MDLHLYELTP DYKNIASLKA KLFVGQQREA PCLIKRNGYY 

       250        260        270        280        290        300 
YLITSGCTGW NPNQAKYAYS KDLASGWSQL YNLGNSTTYR SQPTFIIPVQ GSSGTSYLYM 

       310        320        330        340        350        360 
GDRWAGAWGG KVNDSQYVWL PLNFISDTTL ELPYYDSVKI DASSGIISEY IPDTTRYKLV 

       370        380        390        400        410        420 
NKNSGKVLDV LDGSVDNAAQ IVQWTDNGSL SQQWYLVDVG GGYKKIVNVK SGRALDVKDE 

       430        440        450        460        470        480 
SKEDGGVLIQ YTSNGGYNQH WKFTDIGDGY YKISSRHCGK LIDVRKWSTE DGGIIQQWSD 

       490        500        510        520        530        540 
AGGTNQHWKL VLVSSPEPSP SPSPQVVKGD VNGDLKVNST DFSMLRRYLL KTIDNFPTEN 

       550        560        570 
GKQAADLNGD GRINSSDLTM LKRYLLMEVD L 

« Hide

References

« Hide 'large scale' references
[1]"Complete sequence of Clostridium thermocellum ATCC 27405."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Wu J.H.D., Newcomb M., Richardson P.
Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 27405 / DSM 1237.
[2]"Crystal structure of 1,3Gal43A, an exo-?-1,3-galactanase from Clostridium thermocellum."
Jiang D., Fan J., Wang X., Zhao Y., Huang B., Liu J., Zhang X.C.
J. Struct. Biol. 180:447-457(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.76 ANGSTROMS) OF 31-520 IN COMPLEX WITH GALACTOSE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000568 Genomic DNA. Translation: ABN51896.1.
RefSeqYP_001037089.1. NC_009012.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3VSFX-ray2.76A/B/C/D/E/F31-520[»]
3VSZX-ray2.89A/B/C/D/E/F31-520[»]
3VT0X-ray2.91A/B/C/D/E/F31-520[»]
3VT1X-ray3.19A/B/C/D/E/F31-520[»]
3VT2X-ray3.00A/B/C/D/E/F31-520[»]
ProteinModelPortalA3DD67.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING203119.Cthe_0661.

Protein family/group databases

CAZyCBM13. Carbohydrate-Binding Module Family 13.
GH43. Glycoside Hydrolase Family 43.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABN51896; ABN51896; Cthe_0661.
GeneID4808191.
KEGGcth:Cthe_0661.
PATRIC19515007. VBICloThe47081_0694.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2730.
HOGENOMHOG000169275.
OMAWFGENRN.
OrthoDBEOG676Z69.
ProtClustDBCLSK915436.

Enzyme and pathway databases

BioCycCTHE203119:GIW8-685-MONOMER.

Family and domain databases

Gene3D1.10.1330.10. 1 hit.
2.115.10.20. 1 hit.
InterProIPR016134. Cellulos_enz_dockerin_1.
IPR002105. Cellulos_enz_dockerin_1_Ca-bd.
IPR018242. Dockerin_1.
IPR018247. EF_Hand_1_Ca_BS.
IPR006710. Glyco_hydro_43.
IPR023296. Glyco_hydro_beta-prop.
IPR000772. Ricin_B_lectin.
[Graphical view]
PANTHERPTHR22925. PTHR22925. 1 hit.
PfamPF00404. Dockerin_1. 2 hits.
PF04616. Glyco_hydro_43. 1 hit.
PF14200. RicinB_lectin_2. 1 hit.
[Graphical view]
SMARTSM00458. RICIN. 1 hit.
[Graphical view]
SUPFAMSSF50370. SSF50370. 1 hit.
SSF63446. SSF63446. 1 hit.
SSF75005. SSF75005. 1 hit.
PROSITEPS00448. CLOS_CELLULOSOME_RPT. 2 hits.
PS00018. EF_HAND_1. 1 hit.
PS50231. RICIN_B_LECTIN. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA3DD67_CLOTH
AccessionPrimary (citable) accession number: A3DD67
Entry history
Integrated into UniProtKB/TrEMBL: March 20, 2007
Last sequence update: March 20, 2007
Last modified: December 11, 2013
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)