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Protein
Submitted name:

Glycoside hydrolase family 9

Gene

Cthe_0624

Organism
Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium thermocellum)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi803 – 8031ZincCombined sources
Metal bindingi822 – 8221Calcium 1Combined sources
Metal bindingi918 – 9181Calcium 1; via carbonyl oxygenCombined sources
Metal bindingi921 – 9211Calcium 1Combined sources
Metal bindingi923 – 9231Calcium 1; via carbonyl oxygenCombined sources
Metal bindingi1163 – 11631ZincCombined sources
Metal bindingi1169 – 11691ZincCombined sources
Metal bindingi1356 – 13561Calcium 2Combined sources
Metal bindingi1357 – 13571Calcium 2; via carbonyl oxygenCombined sources
Metal bindingi1385 – 13851Calcium 2Combined sources
Metal bindingi1387 – 13871Calcium 2Combined sources
Metal bindingi1428 – 14281Calcium 2Combined sources
Metal bindingi1448 – 14481Calcium 3Combined sources
Metal bindingi1453 – 14531Calcium 3; via carbonyl oxygenCombined sources
Metal bindingi1455 – 14551Calcium 3Combined sources
Metal bindingi1482 – 14821Calcium 3; via carbonyl oxygenCombined sources
Metal bindingi1485 – 14851Calcium 3; via carbonyl oxygenCombined sources
Metal bindingi1597 – 15971Calcium 3Combined sources

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

HydrolaseImported

Keywords - Ligandi

CalciumCombined sources, Metal-bindingCombined sources, ZincCombined sources

Enzyme and pathway databases

BioCyciCTHE203119:GIW8-643-MONOMER.
MetaCyc:MONOMER-16427.

Protein family/group databases

CAZyiCBM30. Carbohydrate-Binding Module Family 30.
CBM44. Carbohydrate-Binding Module Family 44.
GH44. Glycoside Hydrolase Family 44.
GH9. Glycoside Hydrolase Family 9.

Names & Taxonomyi

Protein namesi
Submitted name:
Glycoside hydrolase family 9Imported
Gene namesi
Ordered Locus Names:Cthe_0624Imported
OrganismiClostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium thermocellum)Imported
Taxonomic identifieri203119 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesRuminococcaceaeRuminiclostridium
Proteomesi
  • UP000002145 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2727Sequence analysisAdd
BLAST
Chaini28 – 16011574Sequence analysisPRO_5002652385Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi203119.Cthe_0624.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1WMXX-ray2.00A/B31-235[»]
1WZXX-ray3.52A/B/C/D31-235[»]
2C26X-ray2.10A1353-1601[»]
2E0PX-ray1.60A773-1287[»]
2EEXX-ray2.00A773-1287[»]
2EJ1X-ray1.80A773-1287[»]
2EQDX-ray2.80A773-1287[»]
ProteinModelPortaliA3DD30.
SMRiA3DD30. Positions 34-228, 775-1283, 1354-1601.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiA3DD30.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1286 – 135267DockerinInterPro annotationAdd
BLAST
Domaini1359 – 144991PKDInterPro annotationAdd
BLAST

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4108J54. Bacteria.
COG3291. LUCA.
OrthoDBiPOG091H19DX.

Family and domain databases

Gene3Di1.10.1330.10. 1 hit.
1.50.10.10. 1 hit.
2.60.40.10. 1 hit.
2.60.40.670. 1 hit.
InterProiIPR008928. 6-hairpin_glycosidase-like.
IPR012341. 6hp_glycosidase.
IPR004197. Cellulase_Ig-like.
IPR002105. Dockerin_1_rpt.
IPR016134. Dockerin_dom.
IPR008979. Galactose-bd-like.
IPR024745. Glyco_hydro_44.
IPR001701. Glyco_hydro_9.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
IPR022409. PKD/Chitinase_dom.
IPR000601. PKD_dom.
[Graphical view]
PfamiPF02927. CelD_N. 1 hit.
PF00404. Dockerin_1. 1 hit.
PF12891. Glyco_hydro_44. 1 hit.
PF00759. Glyco_hydro_9. 1 hit.
PF00801. PKD. 1 hit.
[Graphical view]
SMARTiSM00089. PKD. 1 hit.
[Graphical view]
SUPFAMiSSF48208. SSF48208. 1 hit.
SSF49299. SSF49299. 1 hit.
SSF49785. SSF49785. 1 hit.
SSF51445. SSF51445. 3 hits.
SSF63446. SSF63446. 1 hit.
SSF81296. SSF81296. 1 hit.
PROSITEiPS51766. DOCKERIN. 1 hit.
PS50093. PKD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A3DD30-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKRRLSLLL VLAIMFTMVV PQISASAETV APEGYRKLLD VQIFKDSPVV
60 70 80 90 100
GWSGSGMGEL ETIGDTLPVD TTVTYNGLPT LRLNVQTTVQ SGWWISLLTL
110 120 130 140 150
RGWNTHDLSQ YVENGYLEFD IKGKEGGEDF VIGFRDKVYE RVYGLEIDVT
160 170 180 190 200
TVISNYVTVT TDWQHVKIPL RDLMKINNGF DPSSVTCLVF SKRYADPFTV
210 220 230 240 250
WFSDIKITSE DNEKSAPAIK VNQLGFIPEA EKYALVTGFA EELAVSEGDE
260 270 280 290 300
FAVINAADNS VAYTGKLTLV TEYEPLDSGE KILKADFSDL TVPGKYYISI
310 320 330 340 350
EGLDNSPKFE IGEGIYGPLV VDAARYFYYQ RQGIELEEPY AQGYPRKDVT
360 370 380 390 400
PQDAYAVFAS GKKDPIDITK GWYDAGDFGK YVNAGATGVS DLFWAYEMFP
410 420 430 440 450
SQFVDGQFNI PESGNGVPDI LDEARWELEW MLKMQDKESG GFYPRVQSDN
460 470 480 490 500
DENIKSRIIR DQNGCTTDDT ACAAGILAHA YLIYKDIDPD FAQECLDAAI
510 520 530 540 550
NAWKFLEKNP ENIVSPPGPY NVYDDSGDRL WAAASLYRAT GEEVYHTYFK
560 570 580 590 600
QNYKSFAQKF ESPTAYAHTW GDMWLTAFLS YLKAENKDQE VVDWIDTEFG
610 620 630 640 650
IWLENILTRY ENNPWKNAIV PGNYFWGINM QVMNVPMDAI IGSQLLGKYS
660 670 680 690 700
DRIEKLGFGS LNWLLGTNPL RFSFVSGYGE DSVKGVFSNI YNTDGKQGIP
710 720 730 740 750
KGYMPGGPNA YEGAGLSRFA AKCYTRSTGD WVANEHTVYW NSALVFMAAF
760 770 780 790 800
ANQGSEVNPG PAPEPGVTPN PTEPAKVVDI RIDTSAERKP ISPYIYGSNQ
810 820 830 840 850
ELDATVTAKR FGGNRTTGYN WENNFSNAGS DWLHYSDTYL LEDGGVPKGE
860 870 880 890 900
WSTPASVVTT FHDKALSKNV PYTLITLQAA GYVSADGNGP VSQEETAPSS
910 920 930 940 950
RWKEVKFEKG APFSLTPDTE DDYVYMDEFV NYLVNKYGNA STPTGIKGYS
960 970 980 990 1000
IDNEPALWSH THPRIHPDNV TAKELIEKSV ALSKAVKKVD PYAEIFGPAL
1010 1020 1030 1040 1050
YGFAAYETLQ SAPDWGTEGE GYRWFIDYYL DKMKKASDEE GKRLLDVLDV
1060 1070 1080 1090 1100
HWYPEARGGG ERICFGADPR NIETNKARLQ APRTLWDPTY IEDSWIGQWK
1110 1120 1130 1140 1150
KDFLPILPNL LDSIEKYYPG TKLAITEYDY GGGNHITGGI AQADVLGIFG
1160 1170 1180 1190 1200
KYGVYLATFW GDASNNYTEA GINLYTNYDG KGGKFGDTSV KCETSDIEVS
1210 1220 1230 1240 1250
SAYASIVGED DSKLHIILLN KNYDQPTTFN FSIDSSKNYT IGNVWAFDRG
1260 1270 1280 1290 1300
SSNITQRTPI VNIKDNTFTY TVPALTACHI VLEAAEPVVY GDLNNDSKVN
1310 1320 1330 1340 1350
AVDIMMLKRY ILGIIDNINL TAADIYFDGV VNSSDYNIMK RYLLKAIEDI
1360 1370 1380 1390 1400
PYVPENQAPK AIFTFSPEDP VTDENVVFNA SNSIDEDGTI AYYVWDFGDG
1410 1420 1430 1440 1450
YEGTSTTPTI TYKYKNPGTY KVKLIVTDNQ GASSSFTATI KVTSATGDNS
1460 1470 1480 1490 1500
KFNFEDGTLG GFTTSGTNAT GVVVNTTEKA FKGERGLKWT VTSEGEGTAE
1510 1520 1530 1540 1550
LKLDGGTIVV PGTTMTFRIW IPSGAPIAAI QPYIMPHTPD WSEVLWNSTW
1560 1570 1580 1590 1600
KGYTMVKTDD WNEITLTLPE DVDPTWPQQM GIQVQTIDEG EFTIYVDAID

W
Length:1,601
Mass (Da):178,087
Last modified:March 20, 2007 - v1
Checksum:i7866DD3F41E46DD8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000568 Genomic DNA. Translation: ABN51859.1.
RefSeqiWP_003516552.1. NC_009012.1.

Genome annotation databases

EnsemblBacteriaiABN51859; ABN51859; Cthe_0624.
KEGGicth:Cthe_0624.
PATRICi19514919. VBICloThe47081_0651.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000568 Genomic DNA. Translation: ABN51859.1.
RefSeqiWP_003516552.1. NC_009012.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1WMXX-ray2.00A/B31-235[»]
1WZXX-ray3.52A/B/C/D31-235[»]
2C26X-ray2.10A1353-1601[»]
2E0PX-ray1.60A773-1287[»]
2EEXX-ray2.00A773-1287[»]
2EJ1X-ray1.80A773-1287[»]
2EQDX-ray2.80A773-1287[»]
ProteinModelPortaliA3DD30.
SMRiA3DD30. Positions 34-228, 775-1283, 1354-1601.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi203119.Cthe_0624.

Protein family/group databases

CAZyiCBM30. Carbohydrate-Binding Module Family 30.
CBM44. Carbohydrate-Binding Module Family 44.
GH44. Glycoside Hydrolase Family 44.
GH9. Glycoside Hydrolase Family 9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABN51859; ABN51859; Cthe_0624.
KEGGicth:Cthe_0624.
PATRICi19514919. VBICloThe47081_0651.

Phylogenomic databases

eggNOGiENOG4108J54. Bacteria.
COG3291. LUCA.
OrthoDBiPOG091H19DX.

Enzyme and pathway databases

BioCyciCTHE203119:GIW8-643-MONOMER.
MetaCyc:MONOMER-16427.

Miscellaneous databases

EvolutionaryTraceiA3DD30.

Family and domain databases

Gene3Di1.10.1330.10. 1 hit.
1.50.10.10. 1 hit.
2.60.40.10. 1 hit.
2.60.40.670. 1 hit.
InterProiIPR008928. 6-hairpin_glycosidase-like.
IPR012341. 6hp_glycosidase.
IPR004197. Cellulase_Ig-like.
IPR002105. Dockerin_1_rpt.
IPR016134. Dockerin_dom.
IPR008979. Galactose-bd-like.
IPR024745. Glyco_hydro_44.
IPR001701. Glyco_hydro_9.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
IPR022409. PKD/Chitinase_dom.
IPR000601. PKD_dom.
[Graphical view]
PfamiPF02927. CelD_N. 1 hit.
PF00404. Dockerin_1. 1 hit.
PF12891. Glyco_hydro_44. 1 hit.
PF00759. Glyco_hydro_9. 1 hit.
PF00801. PKD. 1 hit.
[Graphical view]
SMARTiSM00089. PKD. 1 hit.
[Graphical view]
SUPFAMiSSF48208. SSF48208. 1 hit.
SSF49299. SSF49299. 1 hit.
SSF49785. SSF49785. 1 hit.
SSF51445. SSF51445. 3 hits.
SSF63446. SSF63446. 1 hit.
SSF81296. SSF81296. 1 hit.
PROSITEiPS51766. DOCKERIN. 1 hit.
PS50093. PKD. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiA3DD30_CLOTH
AccessioniPrimary (citable) accession number: A3DD30
Entry historyi
Integrated into UniProtKB/TrEMBL: March 20, 2007
Last sequence update: March 20, 2007
Last modified: September 7, 2016
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.