Alpha-L-arabinofuranosidase B - Clostridium thermocellum (strain ATCC 27405 / DSM 1237)

Preferred order of sections

Names and origin

Protein names

Submitted name:
Alpha-L-arabinofuranosidase B EMBL ABN51257.1

Gene names

Ordered Locus Names:

Cthe_0015

Organism

Clostridium thermocellum (strain ATCC 27405 / DSM 1237) [Complete proteome] [HAMAP]

Taxonomic identifier

203119 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium

Protein attributes

Sequence length	707 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Ligand	Calcium PDB 3KMV Metal-binding PDB 3KMV
Technical term	3D-structure PDB 3KMV Complete proteome
Gene Ontology (GO)
Biological process	L-arabinose metabolic process Inferred from electronic annotation. Source: InterPro polysaccharide catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	alpha-N-arabinofuranosidase activity Inferred from electronic annotation. Source: InterPro metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Sites

Metal binding

50

1

Calcium PDB 3KMV

Metal binding

51

1

Calcium; via carbonyl oxygen PDB 3KMV

Metal binding

97

1

Calcium PDB 3KMV

Metal binding

98

1

Calcium; via carbonyl oxygen PDB 3KMV

Metal binding

146

1

Calcium; via carbonyl oxygen PDB 3KMV

Sequences

Sequence

Length

Mass (Da)

Tools

A3DBC8 [UniParc].

Last modified March 20, 2007. Version 1.
Checksum: 87E97D57868FA7A0
Show »

FASTA

707

79,098

        10         20         30         40         50         60 
MANRTFKFIV LLFTTVLFAT SVCYSTNPIT KAKFQSYNYP NMYIRHANFD ARIDENVTPE 

        70         80         90        100        110        120 
MDSQWELVPG LANSGDGYVS IQSVNYPGYY LRHSNYDLSL EKNDGTSLFA ESATFKIVPG 

       130        140        150        160        170        180 
LADPSYISFQ SYNFPTRYIR HYNYLLRLDE IVTELDRQDA TFKIISEDTQ PPAPTLIGDV 

       190        200        210        220        230        240 
NADGKIDSTD LTLLKRYLLR SATLTEEKIL NADTDGNGTV NSTDLNYLKK YILRVISVFP 

       250        260        270        280        290        300 
AEGNKPPTPT PTKTPVATPS PTQPLFTPSF KDVTVHDPSV IKTNGTYYVI GSHLAFAKTN 

       310        320        330        340        350        360 
DLIQWQQINS SVYTGNPLIP NVFDELKEAF EWAKTDTMWA GDIIQLRDGK YYMYYCMCKG 

       370        380        390        400        410        420 
DSPLSALGVA RADKVEGPYK NLGILLRSGA GKGEDGTNYN ATIHPNAVDP HTFFDKNGDL 

       430        440        450        460        470        480 
WMVYGSYSGG IYILKMNPST GKQYPGQGYG KKLLGANHSR IEGPYIQYSP DTGYYYLFLS 

       490        500        510        520        530        540 
FGGLTADGGY NIRVARSQNP DGPYYDAEGN NMINCRGPAG SFFDDRAIEP YGVKLMGNFR 

       550        560        570        580        590        600 
FVDSGIGYVS PGHNSTYYDE ESGKYFIIFH TRFPGKGEMH QVRVHQMFIN EDGWPVIAPH 

       610        620        630        640        650        660 
RYAGETIRRY SPEEVAGTYA YINHGRDISA NIKNSVRISL NKDGTVSGNG VNGRWELSGE 

       670        680        690        700 
HYIRLTVNGT NYTGVVLQQW DDGLKKYVMT FSAISRNGNV TIWGSQL

« Hide

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete sequence of Clostridium thermocellum ATCC 27405." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. Richardson P. Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 27405 / DSM 1237.
[2]	"Family 42 carbohydrate-binding modules display multiple arabinoxylan-binding interfaces presenting different ligand affinities." Ribeiro T., Santos-Silva T., Alves V.D., Dias F.M., Luis A.S., Prates J.A., Ferreira L.M., Romao M.J., Fontes C.M. Biochim. Biophys. Acta 1804:2054-2062(2010) [PubMed: 20637315] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) OF 25-170 IN COMPLEX WITH CALCIUM.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CP000568 Genomic DNA. Translation: ABN51257.1.

RefSeq

YP_001036450.1. NC_009012.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3KMV	X-ray	1.80	A/B/C/D/E/F/G/H	25-170	[»]

ProteinModelPortal

A3DBC8.

ModBase

Search...

Protein-protein interaction databases

STRING

A3DBC8.

Protein family/group databases

CAZy

CBM42. Carbohydrate-Binding Module Family 42.
GH43. Glycoside Hydrolase Family 43.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

GeneID

4808828.

GenomeReviews

Gene locus Cthe_0015 in contig CP000568_GR.

KEGG

cth:Cthe_0015.

PATRIC

19513623. VBICloThe47081_0014.

Organism-specific databases

CMR

Search...

Phylogenomic databases

eggNOG

COG3507.

OMA

NLANVHD.

Family and domain databases

InterPro

IPR007934. AbfB.
IPR016134. Cellulos_enz_dockerin_1.
IPR002105. Cellulos_enz_dockerin_1_Ca-bd.
IPR018242. Dockerin_1.
IPR018247. EF_Hand_1_Ca_BS.
IPR006710. Glyco_hydro_43.
IPR023296. Glyco_hydro_43_beta-prop.
[Graphical view]

Gene3D

G3DSA:1.10.1330.10. Cellulos_enz_dockerin_1. 1 hit.
G3DSA:2.115.10.20. Glyco_hydro_43_beta-prop. 1 hit.

PANTHER

PTHR22925. Glyco_hydro_43. 1 hit.

Pfam

PF05270. AbfB. 1 hit.
PF00404. Dockerin_1. 2 hits.
PF04616. Glyco_hydro_43. 1 hit.
[Graphical view]

SUPFAM

SSF110221. AbfB. 1 hit.
SSF63446. Cellulos_enz_dockerin_1. 1 hit.
SSF75005. Glyco_hydro_43_beta-prop. 1 hit.

PROSITE

PS00448. CLOS_CELLULOSOME_RPT. 1 hit.
PS00018. EF_HAND_1. 2 hits.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

A3DBC8_CLOTH

Accession

Primary (citable) accession number: A3DBC8

Entry history

Integrated into UniProtKB/TrEMBL:	March 20, 2007
Last sequence update:	March 20, 2007
Last modified:	December 14, 2011
This is version 33 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)