Reviewed, UniProtKB/Swiss-Prot A3DA84 (SELD_SHEB5)

Names and origin

Protein names

Recommended name:
    Selenide, water dikinase
    EC=2.7.9.3
Alternative name(s):
    Selenophosphate synthetase
    Selenium donor protein

Gene names

Name:	selD
Ordered Locus Names:	Sbal_4182

Organism

Shewanella baltica (strain OS155 / ATCC BAA-1091) [Complete proteome] [HAMAP]

Taxonomic identifier

325240 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length	352 AA.
Sequence status	Complete.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Synthesizes selenophosphate from selenide and ATP By similarity. HAMAP MF_00625
Catalytic activity	ATP + selenide + H2O = AMP + selenophosphate + phosphate. HAMAP MF_00625
Cofactor	Magnesium By similarity. HAMAP MF_00625
Sequence similarities	Belongs to the selenophosphate synthetase 1 family. Class I subfamily.

Ontologies

Keywords
Ligand	ATP-binding Magnesium Nucleotide-binding Selenium
Molecular function	Kinase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Molecular function	ATP binding Inferred from electronic annotation. Source: HAMAP magnesium ion binding Inferred from electronic annotation. Source: HAMAP selenide, water dikinase activity Inferred from electronic annotation. Source: HAMAP selenium binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 352	352	Selenide, water dikinase HAMAP MF_00625		PRO_1000051601
Regions
	Nucleotide binding	236 – 242	7	ATP Potential
Sites
	Active site	23	1	Potential
	Site	26	1	Important for catalytic activity By similarity

Sequences

	Sequence		Length	Mass (Da)
	A3DA84-1 [UniParc]. Last modified March 20, 2007. Version 1. Checksum: 99F92C2861DC8721	FASTA	352	37,041
	10 20 30 40 50 60 MSDSPVTLPE SIKLTEYSHG AGCGCKISPK VLSTILASQL PVFTDPNLLV GNQSRDDAAV 70 80 90 100 110 120 YKLNDDIGII STTDFFMPIV DDPFTFGRIA ATNAISDIYA MGGTPIMAIA ILGWPINKLP 130 140 150 160 170 180 AEVAQQVVDG GRQACMEAGI MLAGGHSIDA PEPIFGLAVT GQIALTDLKQ NDTAKAGDRL 190 200 210 220 230 240 YLTKPIGIGI LTTAQKQKKL QDEDSHIAVN AMCQLNTIGT TIAKISGVNA LTDVTGFGLA 250 260 270 280 290 300 GHLLEMCQGA KLTAKLKFDA VPLLPRALDY LALGCVPGGT HRNYDSYGEH LPELSEHQKA 310 320 330 340 350 ILCDPQTSGG LLVAVSAEAE AELIDLLDAH HIAPICIGSL ETPTTEVNVV LC

References

[1]

"Complete sequence of chromosome of Shewanella baltica OS155." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D.R., Brettin T., Bruce D., Han C., Tapia R., Brainard J., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Brettar I., Klappenbach J., Konstantinidis K., Rodrigues J., Tiedje J., Richardson P. Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000563 Genomic DNA. Translation: ABN63647.1.
RefSeq	YP_001052516.1.
3D structure databases
SMR	A3DA84. Positions 11-341.
ModBase	Search...
Protein-protein interaction databases
STRING	A3DA84.
Genome annotation databases
GeneID	4842008.
GenomeReviews	Gene locus Sbal_4182 in contig CP000563_GR.
KEGG	sbl:Sbal_4182.
NMPDR	fig|325240.3.peg.1204.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0709.
HOGENOM	HBG383791.
OMA	MMAIAIL.
PhylomeDB	A3DA84.
Family and domain databases
HAMAP	MF_00625. SelD. [Tree]
InterPro	IPR000728. AIR_synth. IPR010918. AIR_synth_C. IPR016188. PurM_N-like. IPR004536. SelD. [Graphical view]
Pfam	PF00586. AIRS. 1 hit. PF02769. AIRS_C. 1 hit. [Graphical view]
PIRSF	PIRSF036407. Selenphspht_syn. 1 hit.
TIGRFAMs	TIGR00476. selD. 1 hit.
ProtoNet	Search...

Entry information

Entry name

SELD_SHEB5

Accession

Primary (citable) accession number: A3DA84

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 15, 2008
Last sequence update:	March 20, 2007
Last modified:	February 9, 2010
This is version 22 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)