A3D280 (A3D280_SHEB5) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Choline dehydrogenase EMBL ABN60843.1

Gene names

Ordered Locus Names:

Sbal_1325

Organism

Shewanella baltica (strain OS155 / ATCC BAA-1091) [Complete proteome] [HAMAP] EMBL ABN60843.1

Taxonomic identifier

325240 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length	561 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine By similarity. SAAS SAAS007867
Catalytic activity	Choline + acceptor = betaine aldehyde + reduced acceptor. SAAS SAAS007867
Cofactor	FAD By similarity. SAAS SAAS007867
Pathway	Amine and polyamine biosynthesis; betaine biosynthesis via choline pathway; betaine aldehyde from choline (cytochrome c reductase route): step 1/1. SAAS SAAS007867

Ontologies

Keywords
Ligand	FAD SAAS SAAS011533 Flavoprotein SAAS SAAS011533
Molecular function	Oxidoreductase SAAS SAAS007867
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	glycine betaine biosynthetic process from choline Inferred from electronic annotation. Source: InterPro
Molecular function	choline dehydrogenase activity Inferred from electronic annotation. Source: EC flavin adenine dinucleotide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A3D280 [UniParc]. Last modified March 20, 2007. Version 1. Checksum: 09997D6B6E1F5636	FASTA	561	61,680
	10 20 30 40 50 60 MAHSLQQKYY NYIIVGAGSA GCVLANRLSK DPKNEVLLLE TGGSDKSIFI QMPTALSIPM 70 80 90 100 110 120 NSPKYAWQFE TQPEPHLDNR KMHCPRGKVL GGSSSINGMV YVRGHARDFD EWQAQGATNW 130 140 150 160 170 180 DYSHCLPYFK KAETWAFGGD EYRGESGPLG VNNGNQMQNP LYQAFVDAGI AAGYLSTADY 190 200 210 220 230 240 NAAQQEGFGP MHMTVKKGVR WSTANAYLRP AMARRNLTVL THTLVHKVLL EGQAAVGVRI 250 260 270 280 290 300 EHKGKVEDIR CNKEVILAAG SIGSPHLLQL SGIGDPQVLA DAGVELQHEL PGVGQNLQDH 310 320 330 340 350 360 LEFYFQFKCL KPISLNGKLD PFSKFLIGAR WILDKSGLGA TNHFESCGFI RSKAGLEWPD 370 380 390 400 410 420 LQYHFLPAAM RYDGKEAFAG HGFQVHVGHN KPKSRGAVTL VSADPKAPPK IQFNYLQHPD 430 440 450 460 470 480 DIEGFRACVR LTREIINQAP FDEYRGEEIQ PGTQVQTDEQ IDAFVRQSVE SAYHPSCSCK 490 500 510 520 530 540 MGTDAMAVVD PETRVHGLQN LRVVDSSIFP TIPNGNLNAP TIMLAERAAD MILEAEMLAP 550 560 ADSAVVVADA WQTTQRSTAT S

References

[1]

"Complete sequence of chromosome of Shewanella baltica OS155." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D.R., Brettin T., Bruce D., Han C., Tapia R., Brainard J., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Brettar I., Klappenbach J., Konstantinidis K., Rodrigues J., Tiedje J., Richardson P. Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: OS155 / ATCC BAA-1091.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000563 Genomic DNA. Translation: ABN60843.1.
RefSeq	YP_001049712.1. NC_009052.1.
3D structure databases
ProteinModelPortal	A3D280.
ModBase	Search...
Protein-protein interaction databases
STRING	A3D280.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4843751.
GenomeReviews	Gene locus Sbal_1325 in contig CP000563_GR.
KEGG	sbl:Sbal_1325.
NMPDR	fig|325240.3.peg.1403.
PATRIC	37181469. VBISheBal55297_1586.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG2303.
HOGENOM	HBG734713.
OMA	HMTVKNG.
PhylomeDB	A3D280.
ProtClustDB	PRK02106.
Family and domain databases
InterPro	IPR011533. Choline_dehydrogenase. IPR012132. GMC_OxRdtase. IPR000172. GMC_OxRdtase_N. IPR007867. GMC_OxRtase_C. [Graphical view]
KO	K00108.
Pfam	PF05199. GMC_oxred_C. 1 hit. PF00732. GMC_oxred_N. 1 hit. [Graphical view]
PIRSF	PIRSF000137. Alcohol_oxidase. 1 hit.
TIGRFAMs	TIGR01810. BetA. 1 hit.
PROSITE	PS00623. GMC_OXRED_1. 1 hit. PS00624. GMC_OXRED_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A3D280_SHEB5

Accession

Primary (citable) accession number: A3D280

Entry history

Integrated into UniProtKB/TrEMBL:	March 20, 2007
Last sequence update:	March 20, 2007
Last modified:	January 25, 2012
This is version 40 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)