A3CZT2 (UBID_SHEB5) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
3-octaprenyl-4-hydroxybenzoate carboxy-lyase
EC=4.1.1.-

Alternative name(s):
Polyprenyl p-hydroxybenzoate decarboxylase

Gene names

Name:	ubiD
Ordered Locus Names:	Sbal_0465

Organism

Shewanella baltica (strain OS155 / ATCC BAA-1091) [Complete proteome] [HAMAP]

Taxonomic identifier

325240 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella › Shewanella baltica

Protein attributes

Sequence length	493 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol By similarity. HAMAP-Rule MF_01636
Cofactor	Divalent metal ions By similarity.
Pathway	Cofactor biosynthesis; ubiquinone biosynthesis. HAMAP-Rule MF_01636
Subunit structure	Homohexamer By similarity.
Subcellular location	Cell membrane; Peripheral membrane protein By similarity HAMAP-Rule MF_01636.
Sequence similarities	Belongs to the UbiD family.

Ontologies

Keywords
Biological process	Ubiquinone biosynthesis
Cellular component	Cell membrane Membrane
Molecular function	Decarboxylase Lyase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	ubiquinone biosynthetic process Inferred from electronic annotation. Source: HAMAP
Cellular_component	plasma membrane Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity Inferred from electronic annotation. Source: HAMAP FMN binding Inferred from electronic annotation. Source: InterPro oxidoreductase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 493	493	3-octaprenyl-4-hydroxybenzoate carboxy-lyase HAMAP-Rule MF_01636		PRO_1000069860

Sequences

	Sequence		Length	Mass (Da)
	A3CZT2 [UniParc]. Last modified March 20, 2007. Version 1. Checksum: F3808B7A48D94F64	FASTA	493	55,591
	10 20 30 40 50 60 MSFKDLRSFI DHLEANGELK RISYPVDPHL EMTEIADRVL RAKGPALLFE NPKDHHMPVL 70 80 90 100 110 120 VNLFGTPKRV AMALGKDDPL ALREVGELLA FLKEPEPPRG FKDAIAKIPM FKQALNMPPK 130 140 150 160 170 180 TVRNPPCQQV IKTGDEVDLT QLPIQHCWPG DVAPLVTWGL TITKGPRKSR QNLGIYRQQL 190 200 210 220 230 240 LGKNKLIMRW LSHRGGALDF ADFKQQFPGE RYPVVVALGA DPVTILGAVT PVPDSMSEYA 250 260 270 280 290 300 FAGLLRGERT EVCKALSCDL EVPATSEIIL EGYIGPEELA EEGPYGDHTG YYNETDKFPV 310 320 330 340 350 360 FTVTHITHRK DAIYHSTYTG RPPDEPAMLG VALNEVFVPI LRKQYPEIVD FYLPPEGCSY 370 380 390 400 410 420 RMAVISIRKQ YPGHAKRVMM GAWSFLRQFM YTKFIVIVDE DVNCRDWQDV IWAITTRMDP 430 440 450 460 470 480 KRDTVMIENT PIDYLDFASP VAGLGSKMGL DATNKWEGET NREWGTPIVM DPKVKQKIDS 490 IWDELGIDDS PTL

References

[1]

"Complete sequence of chromosome of Shewanella baltica OS155." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D.R., Brettin T., Bruce D., Han C., Tapia R., Brainard J., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Brettar I., Klappenbach J., Konstantinidis K., Rodrigues J., Tiedje J., Richardson P. Submitted (FEB-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: OS155 / ATCC BAA-1091.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000563 Genomic DNA. Translation: ABN59995.1.
RefSeq	YP_001048864.1. NC_009052.1.
3D structure databases
ProteinModelPortal	A3CZT2.
SMR	A3CZT2. Positions 3-487.
ModBase	Search...
Protein-protein interaction databases
STRING	325240.Sbal_0465.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABN59995; ABN59995; Sbal_0465.
GeneID	4844229.
KEGG	sbl:Sbal_0465.
PATRIC	37179637. VBISheBal55297_0681.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0043.
HOGENOM	HOG000227663.
KO	K03182.
OMA	PPMEDGW.
ProtClustDB	CLSK905777.
Enzyme and pathway databases
UniPathway	UPA00232.
Family and domain databases
HAMAP	MF_01636. UbiD.
InterPro	IPR002830. Carboxylyase-rel. IPR023677. OPHB_Carboxy-lyase. IPR012349. Split_barrel_FMN-bd. [Graphical view]
Pfam	PF01977. UbiD. 1 hit. [Graphical view]
SUPFAM	SSF50475. FMN_binding. 1 hit.
TIGRFAMs	TIGR00148. TIGR00148. 1 hit.
ProtoNet	Search...

Entry information

Entry name

UBID_SHEB5

Accession

Primary (citable) accession number: A3CZT2

Entry history

Integrated into UniProtKB/Swiss-Prot:	February 5, 2008
Last sequence update:	March 20, 2007
Last modified:	May 1, 2013
This is version 43 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program