Reviewed, UniProtKB/Swiss-Prot A3BKM2 (WOX13_ORYSJ)

Names and origin

Protein names

Recommended name:
    WUSCHEL-related homeobox 13
Alternative name(s):
    OsWOX13
    Protein WOX9

Gene names

Name:	WOX13
Ordered Locus Names:	Os07g0533100, LOC_Os07g34880
ORF Names:	OSJNBa0039D04.15, OsJ_023594

Organism

Oryza sativa subsp. japonica (Rice)

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza

Protein attributes

Sequence length	306 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Function	Transcription factor which may be involved in developmental processes By similarity.
Subcellular location	NucleusBy similarity.
Sequence similarities	Belongs to the WUS homeobox family. Contains 1 homeobox DNA-binding domain.
Sequence caution	The sequence BAD32125.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Cellular component	Nucleus
Domain	Homeobox
Ligand	DNA-binding
Molecular function	Developmental protein
Gene Ontology (GO)
Biological process	multicellular organismal development Inferred from electronic annotation. Source: UniProtKB-KW regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro
Cellular component	nucleus Inferred from electronic annotation. Source: InterPro
Molecular function	sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 306	306	WUSCHEL-related homeobox 13		PRO_0000308650
Regions
	DNA binding	132 – 196	65	Homeobox; WUS-type
Experimental info
	Sequence conflict	137	1	R → W in CAJ84144. Ref.3

Sequences

	Sequence		Length	Mass (Da)
	A3BKM2-1 [UniParc]. Last modified March 20, 2007. Version 1. Checksum: AC444C6E61CD0940	FASTA	306	33,096
	10 20 30 40 50 60 MMALGVPPPP SRAYVSGPLR DDDTFGGDRV RRRRRWLKEQ CPAIIVHGGG RRGGVGHRAL 70 80 90 100 110 120 AAGVSKMRLP ALNAATHRIP STSPLSIPQT LTITRDPPYP MLPRSHGHRT GGGGFSLKSS 130 140 150 160 170 180 PFSSVGEERV PDPKPRRNPR PEQIRILEAI FNSGMVNPPR DEIPRIRMQL QEYGQVGDAN 190 200 210 220 230 240 VFYWFQNRKS RSKNKLRSGG TGRAGLGLGG NRASEPPAAA TAHREAVAPS FTPPPILPPQ 250 260 270 280 290 300 PVQPQQQLVS PVAAPTSLSS SSSDRSSGSS KPARATLTQA MSVTAAMDLL SPLRRSARPR QEQRHV

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The map-based sequence of the rice genome." International rice genome sequencing project (IRGSP) Nature 436:793-800(2005) [PubMed: 16100779] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[2]	"The genomes of Oryza sativa: a history of duplications." Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L. , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H. PLoS Biol. 3:266-281(2005) [PubMed: 15685292] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[3]	"The shoot stem cell niche in angiosperms: expression patterns of WUS orthologues in rice and maize imply major modifications in the course of mono- and dicot evolution." Nardmann J., Werr W. Mol. Biol. Evol. 23:2492-2504(2006) [PubMed: 16987950] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 132-196.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AP006753 Genomic DNA. Translation: BAD32125.1. Sequence problems. CM000144 Genomic DNA. Translation: EAZ40111.1. AM234752 mRNA. Translation: CAJ84144.1.
3D structure databases
ModBase	Search...
Organism-specific databases
Gramene	Q69IP5.
Family and domain databases
InterPro	IPR001356. Homeobox. [Graphical view]
Pfam	PF00046. Homeobox. 1 hit. [Graphical view]
SMART	SM00389. HOX. 1 hit. [Graphical view]
PROSITE	PS00027. HOMEOBOX_1. False negative. PS50071. HOMEOBOX_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

WOX13_ORYSJ

Accession

Primary (citable) accession number: A3BKM2
Secondary accession number(s): A0AAT3, Q69IP5

Entry history

Integrated into UniProtKB/Swiss-Prot:	October 23, 2007
Last sequence update:	March 20, 2007
Last modified:	November 25, 2008
This is version 13 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

PPAP (Plant Proteome Annotation Project)