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A2ZLS4 (DAPF_ORYSI) Reviewed, UniProtKB/Swiss-Prot

Last modified June 11, 2014. Version 41. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Putative diaminopimelate epimerase, chloroplastic

Short name=DAP epimerase
EC=5.1.1.7
Gene names
Name:DAPF
ORF Names:OsI_037517
OrganismOryza sativa subsp. indica (Rice)
Taxonomic identifier39946 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Protein attributes

Sequence length357 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

LL-2,6-diaminoheptanedioate = meso-diaminoheptanedioate. HAMAP-Rule MF_00197

Pathway

Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; DL-2,6-diaminopimelate from LL-2,6-diaminopimelate: step 1/1. HAMAP-Rule MF_00197

Subcellular location

Plastidchloroplast Potential HAMAP-Rule MF_00197.

Sequence similarities

Belongs to the diaminopimelate epimerase family.

Ontologies

Keywords
   Biological processAmino-acid biosynthesis
Lysine biosynthesis
   Cellular componentChloroplast
Plastid
   DomainTransit peptide
   Molecular functionIsomerase
Gene Ontology (GO)
   Biological_processlysine biosynthetic process via diaminopimelate

Inferred from electronic annotation. Source: UniProtKB-UniPathway

   Cellular_componentchloroplast stroma

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

   Molecular_functiondiaminopimelate epimerase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Transit peptide1 – 4747Chloroplast Potential
Chain48 – 357310Putative diaminopimelate epimerase, chloroplastic HAMAP-Rule MF_00197
PRO_0000307180

Regions

Compositional bias58 – 625Poly-Ala HAMAP-Rule MF_00197

Sites

Active site1451 By similarity
Active site3001 By similarity

Sequences

Sequence LengthMass (Da)Tools
A2ZLS4 [UniParc].

Last modified March 20, 2007. Version 1.
Checksum: 4454E4D184C04096

FASTA35738,075
        10         20         30         40         50         60 
MSSATAAATA TIAAAAAAAA KLAATPAPAP SRRRLTLRGN PTARRCVAAM AVSTPRSAAA 

        70         80         90        100        110        120 
AAFLERRESE RALHFVKYQG LGNDFIMMDN RDSAVPKVTP EEAAKLCDRN FGVGADGVIF 

       130        140        150        160        170        180 
VMPGVNGADY TMRIFNSDGS EPEMCGNGVR CFARFIAELE NLQGTHSFKI HTGAGLIIPE 

       190        200        210        220        230        240 
IQNDGKVKVD MGQPILSGPD IPTKLPSTKN EAVVQADLAV DGSTWQVTCV SMGNPHCVTF 

       250        260        270        280        290        300 
GTKELKVLHV DDLKLSDIGP KFEHHEMFPA RTNTEFVEVL SRSHLKMRVW ERGAGATLAC 

       310        320        330        340        350 
GTGACAVVVA AVLEGRAERK CVVDLPGGPL EIEWREDDNH IYMTGPAEAV FYGSAVH 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000137 Genomic DNA. Translation: EAY83558.1.

3D structure databases

ProteinModelPortalA2ZLS4.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING39947.LOC_Os12g37960.2.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Organism-specific databases

GrameneA2ZLS4.

Phylogenomic databases

eggNOGCOG0253.
HOGENOMHOG000220466.

Enzyme and pathway databases

UniPathwayUPA00034; UER00025.

Family and domain databases

HAMAPMF_00197. DAP_epimerase.
InterProIPR018510. DAP_epimerase_AS.
IPR001653. DAP_epimerase_DapF.
[Graphical view]
PANTHERPTHR31689. PTHR31689. 1 hit.
PfamPF01678. DAP_epimerase. 2 hits.
[Graphical view]
TIGRFAMsTIGR00652. DapF. 1 hit.
PROSITEPS01326. DAP_EPIMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameDAPF_ORYSI
AccessionPrimary (citable) accession number: A2ZLS4
Entry history
Integrated into UniProtKB/Swiss-Prot: October 23, 2007
Last sequence update: March 20, 2007
Last modified: June 11, 2014
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PATHWAY comments

Index of metabolic and biosynthesis pathways