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Protein

Auxin response factor 23

Gene

ARF23

Organism
Oryza sativa subsp. indica (Rice)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi149 – 251TF-B3PROSITE-ProRule annotationAdd BLAST103

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processAuxin signaling pathway, Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Auxin response factor 23
Alternative name(s):
OsARF1
Gene namesi
Name:ARF23
Synonyms:ARF1
ORF Names:OsI_035079
OrganismiOryza sativa subsp. indica (Rice)
Taxonomic identifieri39946 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000007015 Componenti: Chromosome 11

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002992821 – 853Auxin response factor 23Add BLAST853

Expressioni

Gene expression databases

ExpressionAtlasiA2ZET6. baseline and differential.

Interactioni

Subunit structurei

Homodimers and heterodimers.By similarity

Structurei

3D structure databases

ProteinModelPortaliA2ZET6.
SMRiA2ZET6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini725 – 809PB1PROSITE-ProRule annotationAdd BLAST85

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi7 – 34Gly-richAdd BLAST28

Domaini

Interactions between auxin response factors (ARFs) and Aux/IAA proteins occur through their C-terminal dimerization domains III and IV.

Sequence similaritiesi

Belongs to the ARF family.Curated

Phylogenomic databases

eggNOGiENOG410IE1Z. Eukaryota.
ENOG4110RNJ. LUCA.
HOGENOMiHOG000241141.
OMAiSDGRMQM.
OrthoDBiEOG09360207.

Family and domain databases

CDDicd10017. B3_DNA. 1 hit.
Gene3Di2.40.330.10. 1 hit.
InterProiView protein in InterPro
IPR033389. AUX/IAA_dom.
IPR010525. Auxin_resp.
IPR003340. B3_DNA-bd.
IPR015300. DNA-bd_pseudobarrel_sf.
IPR000270. PB1_dom.
PfamiView protein in Pfam
PF02309. AUX_IAA. 1 hit.
PF06507. Auxin_resp. 1 hit.
PF02362. B3. 1 hit.
SMARTiView protein in SMART
SM01019. B3. 1 hit.
SUPFAMiSSF101936. SSF101936. 1 hit.
PROSITEiView protein in PROSITE
PS50863. B3. 1 hit.
PS51745. PB1. 1 hit.

Sequencei

Sequence statusi: Complete.

A2ZET6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATAEVGGGG GEGDAAAAAV ARAGGGGGGG GGGGEDALFT ELWSACAGPL
60 70 80 90 100
VTVPRVGEKV FYFPQGHIEQ VEASTNQVGE QRMQLYNLPW KILCEVMNVE
110 120 130 140 150
LKAEPDTDEV YAQLTLLPEL KQQEDNGSTE EEVPSAPAAG HVRPRVHSFC
160 170 180 190 200
KTLTASDTST HGGFSVLRRH ADECLPPLDM SRQPPTQELV AKDLHGVEWR
210 220 230 240 250
FRHIFRGQPR RHLLQSGWSV FVSAKRLVAG DAFIFLRGEN GELRVGVRRA
260 270 280 290 300
MRQQTNVPSS VISSHSMHLG VLATAWHAVN TGTMFTVYYK PRTSPAEFVV
310 320 330 340 350
PYDRYMESLK RNYSIGMRFK MRFEGEEAPE QRFTGTIVGM GDSDPAGWPE
360 370 380 390 400
SKWRSLKVRW DEASSIPRPE RVSPWQIEPA VSPPPVNPLP VPRTKRLRPN
410 420 430 440 450
ATALPADSSA IAKEAATKVV VESEPNGTQR TFQTQENATP KSGFGNSSEL
460 470 480 490 500
ESAQKSIMRP SGFDREKNNT PIQWKLGSDG WMQMSKPESY SEMLSGFQPP
510 520 530 540 550
KDVQTPQGFC SLPEQITAGH SNFWHTVNAQ YQDQQSNHNM FPSSWSFMPP
560 570 580 590 600
NTRLGLNKQN YSMIQEAGVL SQRPGNTKFG NGVYAALPGR GTEQYSGGWF
610 620 630 640 650
GHMMPNSHMD DTQPRLIKPK PLVVAHGDVQ KAKGASCKLF GIHLDSPAKS
660 670 680 690 700
EPLKSPSSVV YDGTPQTPGA TEWRRPDVTE VEKCSDPSKA MKPLDTPQPD
710 720 730 740 750
SVPEKPSSQQ ASRNMSCKSQ GVSTRSCKKV HKQGIALGRS VDLTKFNGYE
760 770 780 790 800
ELIAELDDMF DFNGELKGPK KEWMVVYTDN EGDMMLVGDD PWIEFCDMVH
810 820 830 840 850
KIFIYTREEV QRMNPGTLNS RSEDSHANSM ERGSVGREMR GCLSTSSLNS

ENC
Length:853
Mass (Da):94,056
Last modified:March 20, 2007 - v1
Checksum:i3C58CA243D24622E
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti34Missing in AAG43286 (Ref. 1) Curated1
Sequence conflicti60V → E in AAG43286 (Ref. 1) Curated1
Sequence conflicti122Q → R in AAG43286 (Ref. 1) Curated1
Sequence conflicti325G → S in AAG43286 (Ref. 1) Curated1
Sequence conflicti481W → R in AAG43286 (Ref. 1) Curated1
Sequence conflicti602H → L in AAG43286 (Ref. 1) Curated1
Sequence conflicti653L → S in AAG43286 (Ref. 1) Curated1
Sequence conflicti712S → SSQQAS in AAG43286 (Ref. 1) Curated1
Sequence conflicti820S → L in AAG43286 (Ref. 1) Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF140228 mRNA. Translation: AAG43286.2.
CM000136 Genomic DNA. Translation: EAY81120.1.

Genome annotation databases

EnsemblPlantsiBGIOSGA033901-TA; BGIOSGA033901-PA; BGIOSGA033901.
GrameneiBGIOSGA033901-TA; BGIOSGA033901-PA; BGIOSGA033901.

Similar proteinsi

Entry informationi

Entry nameiARFW_ORYSI
AccessioniPrimary (citable) accession number: A2ZET6
Secondary accession number(s): Q9FR78
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 11, 2007
Last sequence update: March 20, 2007
Last modified: December 20, 2017
This is version 65 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families