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Protein

Transcription factor PCF2

Gene

PCF2

Organism
Oryza sativa subsp. indica (Rice)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter.1 Publication

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionActivator, Developmental protein, DNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription factor PCF2
Gene namesi
Name:PCF2
ORF Names:OsI_029094
OrganismiOryza sativa subsp. indica (Rice)
Taxonomic identifieri39946 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000007015 Componenti: Chromosome 8

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003308051 – 373Transcription factor PCF2Add BLAST373

Interactioni

Subunit structurei

Forms homodimers and heterodimers with PCF2.Curated

Structurei

3D structure databases

SMRiA2YXQ1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini75 – 129TCPPROSITE-ProRule annotationAdd BLAST55

Phylogenomic databases

eggNOGiENOG410IE9F. Eukaryota.
ENOG410YJS2. LUCA.
HOGENOMiHOG000243250.
OMAiSNSGEHP.
OrthoDBiEOG09360HZ1.

Family and domain databases

InterProiView protein in InterPro
IPR017887. TF_TCP_subgr.
IPR005333. Transcription_factor_TCP.
PfamiView protein in Pfam
PF03634. TCP. 1 hit.
PROSITEiView protein in PROSITE
PS51369. TCP. 1 hit.

Sequencei

Sequence statusi: Complete.

A2YXQ1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEAQAQDKAE EGEEEGTRQQ HAQAGPVGAA GGGGGGGAAA VAMSAIPMNS
60 70 80 90 100
WLVPKPEPVE FFGGMAMVRK PPPRNRDRHT KVEGRGRRIR MPAACAARIF
110 120 130 140 150
QLTRELGHKS DGETIRWLLQ QSEPAIIAAT GTGTVPAIAT TVDGVLRIPT
160 170 180 190 200
QSSSSSGPAS SAVVDGEESS AKRRRKLQPT RAVAGASPLA TAAPAAYYPV
210 220 230 240 250
IADPLLQGSG GAAISVPSGL APITATGAPQ GLVPVFAVPA TGSPAVAGGN
260 270 280 290 300
RMIPQATAVW MVPQPAGAAG AGNQPTQFWA IQSAPQLVNF AGAQFPTAIN
310 320 330 340 350
VADFQQQQQQ QPVSTTIVQN SNSGEHMHFS GADSHEQQRR GRKEGNSGGV
360 370
VDHPEEDEDD DDDEPVSDSS PEE
Length:373
Mass (Da):38,501
Last modified:March 20, 2007 - v1
Checksum:i8A71BFE320AC7B12
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000133 Genomic DNA. Translation: EAZ07862.1.

Genome annotation databases

EnsemblPlantsiBGIOSGA026548-TA; BGIOSGA026548-PA; BGIOSGA026548.
GrameneiBGIOSGA026548-TA; BGIOSGA026548-PA; BGIOSGA026548.

Similar proteinsi

Entry informationi

Entry nameiPCF2_ORYSI
AccessioniPrimary (citable) accession number: A2YXQ1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 29, 2008
Last sequence update: March 20, 2007
Last modified: August 30, 2017
This is version 49 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome