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A2YQU8

- SLU7_ORYSI

UniProt

A2YQU8 - SLU7_ORYSI

Protein

Pre-mRNA-splicing factor SLU7

Gene

OsI_27673

Organism
Oryza sativa subsp. indica (Rice)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 41 (01 Oct 2014)
      Sequence version 2 (29 May 2007)
      Previous versions | rss
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    Functioni

    Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron.By similarity

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri94 – 11118CCHC-typeAdd
    BLAST

    GO - Molecular functioni

    1. nucleic acid binding Source: InterPro
    2. zinc ion binding Source: InterPro

    GO - Biological processi

    1. mRNA processing Source: UniProtKB-KW
    2. positive regulation of cell proliferation Source: EnsemblPlants/Gramene
    3. RNA splicing Source: UniProtKB-KW

    Keywords - Biological processi

    mRNA processing, mRNA splicing

    Keywords - Ligandi

    Metal-binding, Zinc

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Pre-mRNA-splicing factor SLU7
    Gene namesi
    ORF Names:OsI_27673
    OrganismiOryza sativa subsp. indica (Rice)
    Taxonomic identifieri39946 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

    Organism-specific databases

    GrameneiA2YQU8.

    Subcellular locationi

    Nucleus By similarity

    GO - Cellular componenti

    1. spliceosomal complex Source: UniProtKB-KW

    Keywords - Cellular componenti

    Nucleus, Spliceosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 536536Pre-mRNA-splicing factor SLU7PRO_0000289205Add
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the SLU7 family.Curated
    Contains 1 CCHC-type zinc finger.Curated

    Zinc finger

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri94 – 11118CCHC-typeAdd
    BLAST

    Keywords - Domaini

    Zinc-finger

    Phylogenomic databases

    eggNOGiNOG251791.
    HOGENOMiHOG000194391.

    Family and domain databases

    InterProiIPR021715. Slu7.
    IPR001878. Znf_CCHC.
    [Graphical view]
    PfamiPF11708. Slu7. 1 hit.
    [Graphical view]
    SMARTiSM00343. ZnF_C2HC. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A2YQU8-1 [UniParc]FASTAAdd to Basket

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    MATASVSFKS REDHRKQLEL EEARKAGLAP AEVDEDGKEI NPHIPQYMSS    50
    APWYLNADKP SLKHQRNWKS DPNYTKSWYD RGAKLFQANK YRKGACENCG 100
    AMTHDKKSCM ERPRSVGAKW TNINIAPDEK VESFELDYDG KRDRWNGYDP 150
    STYTRVIADY EAREEARKKY LKEQQLKKLE EKDGEEGDEN VASEEEDEED 200
    GLKIDEAKVD ESAQMDFAKV EKRVRTTGGG STGTVRNLRI REDTAKYLLN 250
    LDVNSAYYDP KTRSMREDPL PDADPNDKFY VGDNQNRLSG QALEFKQLNI 300
    HAWEAFDKGQ DIHMQAAPSQ AELLFKSFKI KKEKLKSENK DKIMEKYGNA 350
    ASEEPIPREL LLGQSEKEIE YDRTGRIIKG QDVALPKSKY EEDVFINNHT 400
    TVWGSWWKDH QWGYKCCKQT IRNSYCTGLA GIEAAEASAD LMKANMARKE 450
    AAEDEPVRHE EKRLATWGTD VPNDIVLDKK LLDEALKKEG ARRKEEMDER 500
    KRKYNVKWND EVTAEDMEAY RMKRIHHDDP MRDFLH 536
    Length:536
    Mass (Da):62,076
    Last modified:May 29, 2007 - v2
    Checksum:i36C9AC6A6D835742
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000133 Genomic DNA. Translation: EEC82847.1.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000133 Genomic DNA. Translation: EEC82847.1 .

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Organism-specific databases

    Gramenei A2YQU8.

    Phylogenomic databases

    eggNOGi NOG251791.
    HOGENOMi HOG000194391.

    Family and domain databases

    InterProi IPR021715. Slu7.
    IPR001878. Znf_CCHC.
    [Graphical view ]
    Pfami PF11708. Slu7. 1 hit.
    [Graphical view ]
    SMARTi SM00343. ZnF_C2HC. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genomes of Oryza sativa: a history of duplications."
      Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
      , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
      PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. 93-11.

    Entry informationi

    Entry nameiSLU7_ORYSI
    AccessioniPrimary (citable) accession number: A2YQU8
    Secondary accession number(s): B8BAF2
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 29, 2007
    Last sequence update: May 29, 2007
    Last modified: October 1, 2014
    This is version 41 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3