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A2YQU8

- SLU7_ORYSI

UniProt

A2YQU8 - SLU7_ORYSI

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Protein
Pre-mRNA-splicing factor SLU7
Gene
OsI_27673
Organism
Oryza sativa subsp. indica (Rice)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron By similarity.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri94 – 11118CCHC-type
Add
BLAST

GO - Molecular functioni

  1. nucleic acid binding Source: InterPro
  2. zinc ion binding Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. RNA splicing Source: UniProtKB-KW
  2. mRNA processing Source: UniProtKB-KW
  3. positive regulation of cell proliferation Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Biological processi

mRNA processing, mRNA splicing

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Pre-mRNA-splicing factor SLU7
Gene namesi
ORF Names:OsI_27673
OrganismiOryza sativa subsp. indica (Rice)
Taxonomic identifieri39946 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Organism-specific databases

GrameneiA2YQU8.

Subcellular locationi

Nucleus By similarity

GO - Cellular componenti

  1. spliceosomal complex Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Nucleus, Spliceosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 536536Pre-mRNA-splicing factor SLU7
PRO_0000289205Add
BLAST

Family & Domainsi

Sequence similaritiesi

Belongs to the SLU7 family.

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiNOG251791.
HOGENOMiHOG000194391.

Family and domain databases

InterProiIPR021715. Slu7.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF11708. Slu7. 1 hit.
[Graphical view]
SMARTiSM00343. ZnF_C2HC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A2YQU8-1 [UniParc]FASTAAdd to Basket

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MATASVSFKS REDHRKQLEL EEARKAGLAP AEVDEDGKEI NPHIPQYMSS    50
APWYLNADKP SLKHQRNWKS DPNYTKSWYD RGAKLFQANK YRKGACENCG 100
AMTHDKKSCM ERPRSVGAKW TNINIAPDEK VESFELDYDG KRDRWNGYDP 150
STYTRVIADY EAREEARKKY LKEQQLKKLE EKDGEEGDEN VASEEEDEED 200
GLKIDEAKVD ESAQMDFAKV EKRVRTTGGG STGTVRNLRI REDTAKYLLN 250
LDVNSAYYDP KTRSMREDPL PDADPNDKFY VGDNQNRLSG QALEFKQLNI 300
HAWEAFDKGQ DIHMQAAPSQ AELLFKSFKI KKEKLKSENK DKIMEKYGNA 350
ASEEPIPREL LLGQSEKEIE YDRTGRIIKG QDVALPKSKY EEDVFINNHT 400
TVWGSWWKDH QWGYKCCKQT IRNSYCTGLA GIEAAEASAD LMKANMARKE 450
AAEDEPVRHE EKRLATWGTD VPNDIVLDKK LLDEALKKEG ARRKEEMDER 500
KRKYNVKWND EVTAEDMEAY RMKRIHHDDP MRDFLH 536
Length:536
Mass (Da):62,076
Last modified:May 29, 2007 - v2
Checksum:i36C9AC6A6D835742
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000133 Genomic DNA. Translation: EEC82847.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000133 Genomic DNA. Translation: EEC82847.1 .

3D structure databases

ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Organism-specific databases

Gramenei A2YQU8.

Phylogenomic databases

eggNOGi NOG251791.
HOGENOMi HOG000194391.

Family and domain databases

InterProi IPR021715. Slu7.
IPR001878. Znf_CCHC.
[Graphical view ]
Pfami PF11708. Slu7. 1 hit.
[Graphical view ]
SMARTi SM00343. ZnF_C2HC. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
    PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. 93-11.

Entry informationi

Entry nameiSLU7_ORYSI
AccessioniPrimary (citable) accession number: A2YQU8
Secondary accession number(s): B8BAF2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 29, 2007
Last sequence update: May 29, 2007
Last modified: April 16, 2014
This is version 40 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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