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A2YQU8

- SLU7_ORYSI

UniProt

A2YQU8 - SLU7_ORYSI

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Protein

Pre-mRNA-splicing factor SLU7

Gene

OsI_27673

Organism
Oryza sativa subsp. indica (Rice)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron.By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri94 – 11118CCHC-typeAdd
BLAST

GO - Molecular functioni

  1. nucleic acid binding Source: InterPro
  2. zinc ion binding Source: InterPro

GO - Biological processi

  1. mRNA processing Source: UniProtKB-KW
  2. RNA splicing Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

mRNA processing, mRNA splicing

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Pre-mRNA-splicing factor SLU7
Gene namesi
ORF Names:OsI_27673
OrganismiOryza sativa subsp. indica (Rice)
Taxonomic identifieri39946 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Organism-specific databases

GrameneiA2YQU8.

Subcellular locationi

Nucleus By similarity

GO - Cellular componenti

  1. spliceosomal complex Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Nucleus, Spliceosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 536536Pre-mRNA-splicing factor SLU7PRO_0000289205Add
BLAST

Family & Domainsi

Sequence similaritiesi

Belongs to the SLU7 family.Curated
Contains 1 CCHC-type zinc finger.Curated

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri94 – 11118CCHC-typeAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiNOG251791.
HOGENOMiHOG000194391.

Family and domain databases

InterProiIPR021715. Slu7.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF11708. Slu7. 1 hit.
[Graphical view]
SMARTiSM00343. ZnF_C2HC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A2YQU8-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MATASVSFKS REDHRKQLEL EEARKAGLAP AEVDEDGKEI NPHIPQYMSS
60 70 80 90 100
APWYLNADKP SLKHQRNWKS DPNYTKSWYD RGAKLFQANK YRKGACENCG
110 120 130 140 150
AMTHDKKSCM ERPRSVGAKW TNINIAPDEK VESFELDYDG KRDRWNGYDP
160 170 180 190 200
STYTRVIADY EAREEARKKY LKEQQLKKLE EKDGEEGDEN VASEEEDEED
210 220 230 240 250
GLKIDEAKVD ESAQMDFAKV EKRVRTTGGG STGTVRNLRI REDTAKYLLN
260 270 280 290 300
LDVNSAYYDP KTRSMREDPL PDADPNDKFY VGDNQNRLSG QALEFKQLNI
310 320 330 340 350
HAWEAFDKGQ DIHMQAAPSQ AELLFKSFKI KKEKLKSENK DKIMEKYGNA
360 370 380 390 400
ASEEPIPREL LLGQSEKEIE YDRTGRIIKG QDVALPKSKY EEDVFINNHT
410 420 430 440 450
TVWGSWWKDH QWGYKCCKQT IRNSYCTGLA GIEAAEASAD LMKANMARKE
460 470 480 490 500
AAEDEPVRHE EKRLATWGTD VPNDIVLDKK LLDEALKKEG ARRKEEMDER
510 520 530
KRKYNVKWND EVTAEDMEAY RMKRIHHDDP MRDFLH
Length:536
Mass (Da):62,076
Last modified:May 29, 2007 - v2
Checksum:i36C9AC6A6D835742
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000133 Genomic DNA. Translation: EEC82847.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000133 Genomic DNA. Translation: EEC82847.1 .

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Organism-specific databases

Gramenei A2YQU8.

Phylogenomic databases

eggNOGi NOG251791.
HOGENOMi HOG000194391.

Family and domain databases

InterProi IPR021715. Slu7.
IPR001878. Znf_CCHC.
[Graphical view ]
Pfami PF11708. Slu7. 1 hit.
[Graphical view ]
SMARTi SM00343. ZnF_C2HC. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
    PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. 93-11.

Entry informationi

Entry nameiSLU7_ORYSI
AccessioniPrimary (citable) accession number: A2YQU8
Secondary accession number(s): B8BAF2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 29, 2007
Last sequence update: May 29, 2007
Last modified: October 29, 2014
This is version 42 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3