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A2YQU8 (SLU7_ORYSI) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 40. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Pre-mRNA-splicing factor SLU7
Gene names
ORF Names:OsI_27673
OrganismOryza sativa subsp. indica (Rice)
Taxonomic identifier39946 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Protein attributes

Sequence length536 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron By similarity.

Subcellular location

Nucleus By similarity.

Sequence similarities

Belongs to the SLU7 family.

Contains 1 CCHC-type zinc finger.

Ontologies

Keywords
   Biological processmRNA processing
mRNA splicing
   Cellular componentNucleus
Spliceosome
   DomainZinc-finger
   LigandMetal-binding
Zinc
Gene Ontology (GO)
   Biological_processRNA splicing

Inferred from electronic annotation. Source: UniProtKB-KW

mRNA processing

Inferred from electronic annotation. Source: UniProtKB-KW

positive regulation of cell proliferation

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

   Cellular_componentspliceosomal complex

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionnucleic acid binding

Inferred from electronic annotation. Source: InterPro

zinc ion binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 536536Pre-mRNA-splicing factor SLU7
PRO_0000289205

Regions

Zinc finger94 – 11118CCHC-type

Sequences

Sequence LengthMass (Da)Tools
A2YQU8 [UniParc].

Last modified May 29, 2007. Version 2.
Checksum: 36C9AC6A6D835742

FASTA53662,076
        10         20         30         40         50         60 
MATASVSFKS REDHRKQLEL EEARKAGLAP AEVDEDGKEI NPHIPQYMSS APWYLNADKP 

        70         80         90        100        110        120 
SLKHQRNWKS DPNYTKSWYD RGAKLFQANK YRKGACENCG AMTHDKKSCM ERPRSVGAKW 

       130        140        150        160        170        180 
TNINIAPDEK VESFELDYDG KRDRWNGYDP STYTRVIADY EAREEARKKY LKEQQLKKLE 

       190        200        210        220        230        240 
EKDGEEGDEN VASEEEDEED GLKIDEAKVD ESAQMDFAKV EKRVRTTGGG STGTVRNLRI 

       250        260        270        280        290        300 
REDTAKYLLN LDVNSAYYDP KTRSMREDPL PDADPNDKFY VGDNQNRLSG QALEFKQLNI 

       310        320        330        340        350        360 
HAWEAFDKGQ DIHMQAAPSQ AELLFKSFKI KKEKLKSENK DKIMEKYGNA ASEEPIPREL 

       370        380        390        400        410        420 
LLGQSEKEIE YDRTGRIIKG QDVALPKSKY EEDVFINNHT TVWGSWWKDH QWGYKCCKQT 

       430        440        450        460        470        480 
IRNSYCTGLA GIEAAEASAD LMKANMARKE AAEDEPVRHE EKRLATWGTD VPNDIVLDKK 

       490        500        510        520        530 
LLDEALKKEG ARRKEEMDER KRKYNVKWND EVTAEDMEAY RMKRIHHDDP MRDFLH 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000133 Genomic DNA. Translation: EEC82847.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Organism-specific databases

GrameneA2YQU8.

Phylogenomic databases

eggNOGNOG251791.
HOGENOMHOG000194391.

Family and domain databases

InterProIPR021715. Slu7.
IPR001878. Znf_CCHC.
[Graphical view]
PfamPF11708. Slu7. 1 hit.
[Graphical view]
SMARTSM00343. ZnF_C2HC. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameSLU7_ORYSI
AccessionPrimary (citable) accession number: A2YQU8
Secondary accession number(s): B8BAF2
Entry history
Integrated into UniProtKB/Swiss-Prot: May 29, 2007
Last sequence update: May 29, 2007
Last modified: April 16, 2014
This is version 40 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families