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Protein

Pre-mRNA-splicing factor SLU7

Gene

OsI_27673

Organism
Oryza sativa subsp. indica (Rice)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri94 – 111CCHC-typeAdd BLAST18

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processmRNA processing, mRNA splicing
LigandMetal-binding, Zinc

Enzyme and pathway databases

ReactomeiR-OSA-72187 mRNA 3'-end processing

Names & Taxonomyi

Protein namesi
Recommended name:
Pre-mRNA-splicing factor SLU7
Gene namesi
ORF Names:OsI_27673
OrganismiOryza sativa subsp. indica (Rice)
Taxonomic identifieri39946 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000007015 Componenti: Chromosome 8

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus, Spliceosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002892051 – 536Pre-mRNA-splicing factor SLU7Add BLAST536

PTM databases

iPTMnetiA2YQU8

Expressioni

Gene expression databases

ExpressionAtlasiA2YQU8 differential

Interactioni

Protein-protein interaction databases

STRINGi39946.BGIOSGA027917-PA

Family & Domainsi

Sequence similaritiesi

Belongs to the SLU7 family.Curated

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri94 – 111CCHC-typeAdd BLAST18

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG2560 Eukaryota
ENOG410XPPP LUCA
HOGENOMiHOG000194391
OMAiKPQTLME
OrthoDBiEOG09360896

Family and domain databases

InterProiView protein in InterPro
IPR021715 Slu7
PfamiView protein in Pfam
PF11708 Slu7, 1 hit

Sequencei

Sequence statusi: Complete.

A2YQU8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATASVSFKS REDHRKQLEL EEARKAGLAP AEVDEDGKEI NPHIPQYMSS
60 70 80 90 100
APWYLNADKP SLKHQRNWKS DPNYTKSWYD RGAKLFQANK YRKGACENCG
110 120 130 140 150
AMTHDKKSCM ERPRSVGAKW TNINIAPDEK VESFELDYDG KRDRWNGYDP
160 170 180 190 200
STYTRVIADY EAREEARKKY LKEQQLKKLE EKDGEEGDEN VASEEEDEED
210 220 230 240 250
GLKIDEAKVD ESAQMDFAKV EKRVRTTGGG STGTVRNLRI REDTAKYLLN
260 270 280 290 300
LDVNSAYYDP KTRSMREDPL PDADPNDKFY VGDNQNRLSG QALEFKQLNI
310 320 330 340 350
HAWEAFDKGQ DIHMQAAPSQ AELLFKSFKI KKEKLKSENK DKIMEKYGNA
360 370 380 390 400
ASEEPIPREL LLGQSEKEIE YDRTGRIIKG QDVALPKSKY EEDVFINNHT
410 420 430 440 450
TVWGSWWKDH QWGYKCCKQT IRNSYCTGLA GIEAAEASAD LMKANMARKE
460 470 480 490 500
AAEDEPVRHE EKRLATWGTD VPNDIVLDKK LLDEALKKEG ARRKEEMDER
510 520 530
KRKYNVKWND EVTAEDMEAY RMKRIHHDDP MRDFLH
Length:536
Mass (Da):62,076
Last modified:May 29, 2007 - v2
Checksum:i36C9AC6A6D835742
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000133 Genomic DNA Translation: EEC82847.1

Genome annotation databases

EnsemblPlantsiBGIOSGA027917-TA; BGIOSGA027917-PA; BGIOSGA027917
Os08t0127700-01; Os08t0127700-01; Os08g0127700
GrameneiBGIOSGA027917-TA; BGIOSGA027917-PA; BGIOSGA027917
Os08t0127700-01; Os08t0127700-01; Os08g0127700

Similar proteinsi

Entry informationi

Entry nameiSLU7_ORYSI
AccessioniPrimary (citable) accession number: A2YQU8
Secondary accession number(s): B8BAF2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 29, 2007
Last sequence update: May 29, 2007
Last modified: June 20, 2018
This is version 61 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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