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A2YQ93

- PRR37_ORYSI

UniProt

A2YQ93 - PRR37_ORYSI

Protein

Two-component response regulator-like PRR37

Gene

PRR37

Organism
Oryza sativa subsp. indica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 39 (01 Oct 2014)
      Sequence version 2 (11 Sep 2007)
      Previous versions | rss
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    Functioni

    Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock By similarity.By similarity

    GO - Molecular functioni

    1. DNA binding Source: EnsemblPlants/Gramene
    2. phosphorelay response regulator activity Source: InterPro

    GO - Biological processi

    1. circadian rhythm Source: EnsemblPlants/Gramene
    2. negative regulation of transcription, DNA-templated Source: EnsemblPlants/Gramene
    3. red or far-red light signaling pathway Source: EnsemblPlants/Gramene
    4. response to temperature stimulus Source: EnsemblPlants/Gramene
    5. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Biological processi

    Biological rhythms, Transcription, Transcription regulation, Two-component regulatory system

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Two-component response regulator-like PRR37
    Alternative name(s):
    Pseudo-response regulator 37
    Short name:
    OsPRR37
    Gene namesi
    Name:PRR37
    ORF Names:OsI_026486
    OrganismiOryza sativa subsp. indica (Rice)
    Taxonomic identifieri39946 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

    Organism-specific databases

    GrameneiA2YQ93.

    Subcellular locationi

    Nucleus Curated

    GO - Cellular componenti

    1. mitochondrion Source: EnsemblPlants/Gramene
    2. nucleus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Nucleus

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 742742Two-component response regulator-like PRR37PRO_0000303007Add
    BLAST

    Expressioni

    Inductioni

    Expressed with a circadian rhythm showing a broad peak in the middle day.1 Publication

    Structurei

    3D structure databases

    ProteinModelPortaliA2YQ93.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini63 – 181119Response regulatoryPROSITE-ProRule annotationAdd
    BLAST
    Domaini682 – 72443CCTPROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the ARR-like family.Curated
    Contains 1 CCT domain.PROSITE-ProRule annotation
    Contains 1 response regulatory domain.PROSITE-ProRule annotation

    Phylogenomic databases

    eggNOGiCOG3437.
    HOGENOMiHOG000034018.

    Family and domain databases

    InterProiIPR010402. CCT_domain.
    IPR011006. CheY-like_superfamily.
    IPR001789. Sig_transdc_resp-reg_receiver.
    [Graphical view]
    PfamiPF06203. CCT. 1 hit.
    PF00072. Response_reg. 1 hit.
    [Graphical view]
    SMARTiSM00448. REC. 1 hit.
    [Graphical view]
    SUPFAMiSSF52172. SSF52172. 1 hit.
    PROSITEiPS51017. CCT. 1 hit.
    PS50110. RESPONSE_REGULATORY. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A2YQ93-1 [UniParc]FASTAAdd to Basket

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    MMGTAHHNQT AGSALGVGVG DANDAVPGAG GGGYSDPDGG PISGVQRPPQ    50
    VCWERFIQKK TIKVLLVDSD DSTRQVVSAL LRHCMYEVIP AENGQQAWTY 100
    LEDMQNSIDL VLTEVVMPGV SGISLLSRIM NHNICKNIPV IMMSSNDAMG 150
    TVFKCLSKGA VDFLVKPIRK NELKNLWQHV WRRCHSSSGS GSESGIQTQK 200
    CAKSKSGDES NNNSGSNDDD DDDGVIMGLN ARDGSDNGSG TQAQSSWTKR 250
    AVEIDSPQAM SPDQLADPPD STCAQVIHLK SDICSNRWLP CTSNKNSKKQ 300
    KETNDDFKGK DLEIGSPRNL NTAYQSSPNE RSIKPTDRRN EYPLQNNSKE 350
    AAMENLEESS VRAADLIGSM AKNMDAQQAA RATNAPNCSS KVPEGKDKNR 400
    DNIMPSLELS LKRSRSTGDD ANAIQEEQRN VLRRSDLSAF TRYHTPVASN 450
    QGGTGFVGSC SPHDNISEAM KTDSAYNMKS NSDAAPIKQG SNGSSNNNDM 500
    GSTTKNVVTK PSTNKERVMS PSAVKANGHT SAFHPAQHWT SPANTTGKEK 550
    TDEVANNAAK RAQPGEVQSN LVQHPRPILH YVHFDVSREN GGSGAPQCGS 600
    SNVFDPPVEG HAANYGVNGS NSGSNNGSNG QNGSTTAVNA ERPNMEIANG 650
    TINKSGPGGG NGSGSGSGND MYLKRFTQRE HRVAAVIKFR QKRKERNFGK 700
    KVRYQSRKRL AEQRPRVRGQ FVRQAVQDQQ QQGGGREAAA DR 742
    Length:742
    Mass (Da):79,957
    Last modified:September 11, 2007 - v2
    Checksum:i5008A379861CCC96
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti42 – 421I → T in BAD38858. (PubMed:15725670)Curated
    Sequence conflicti47 – 471R → P in BAD38858. (PubMed:15725670)Curated
    Sequence conflicti109 – 1102DL → VF in AAQ83694. 1 PublicationCurated
    Sequence conflicti132 – 1387HNICKNI → PQYFARIF in AAQ83694. 1 PublicationCurated
    Sequence conflicti214 – 2141S → N in BAD38858. (PubMed:15725670)Curated
    Sequence conflicti383 – 3831T → A in BAD38858. (PubMed:15725670)Curated
    Sequence conflicti420 – 4201D → G in CM000132. (PubMed:15685292)Curated
    Sequence conflicti639 – 6391N → D in BAD38858. (PubMed:15725670)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000132 Genomic DNA. No translation available.
    AB189042 mRNA. Translation: BAD38858.1.
    AY359964 mRNA. Translation: AAQ83694.1.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000132 Genomic DNA. No translation available.
    AB189042 mRNA. Translation: BAD38858.1 .
    AY359964 mRNA. Translation: AAQ83694.1 .

    3D structure databases

    ProteinModelPortali A2YQ93.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Organism-specific databases

    Gramenei A2YQ93.

    Phylogenomic databases

    eggNOGi COG3437.
    HOGENOMi HOG000034018.

    Family and domain databases

    InterProi IPR010402. CCT_domain.
    IPR011006. CheY-like_superfamily.
    IPR001789. Sig_transdc_resp-reg_receiver.
    [Graphical view ]
    Pfami PF06203. CCT. 1 hit.
    PF00072. Response_reg. 1 hit.
    [Graphical view ]
    SMARTi SM00448. REC. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52172. SSF52172. 1 hit.
    PROSITEi PS51017. CCT. 1 hit.
    PS50110. RESPONSE_REGULATORY. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genomes of Oryza sativa: a history of duplications."
      Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
      , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
      PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. 93-11.
    2. "Circadian-associated rice pseudo response regulators (OsPRRs): insight into the control of flowering time."
      Murakami M., Matsushika A., Ashikari M., Yamashino T., Mizuno T.
      Biosci. Biotechnol. Biochem. 69:410-414(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 1-704, INDUCTION.
      Strain: cv. Kasalath.
    3. "Differential expression of pseudo-response regulator gene in rice hybrid F1 (Shanyou 63) and its parents."
      Wang Y., Wei C., Yang J.
      Submitted (AUG-2003) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 104-742.

    Entry informationi

    Entry nameiPRR37_ORYSI
    AccessioniPrimary (citable) accession number: A2YQ93
    Secondary accession number(s): Q689G5
    , Q689G8, Q6UV11, Q6Z3X9
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: September 11, 2007
    Last sequence update: September 11, 2007
    Last modified: October 1, 2014
    This is version 39 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Caution

    Lacks the phospho-accepting Asp (here Glu-114), present in the receiver domain, which is one of the conserved features of two-component response regulators (ARRs) family.Curated

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3