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A2Y205

- RBS1_ORYSI

UniProt

A2Y205 - RBS1_ORYSI

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Protein
Ribulose bisphosphate carboxylase small chain, chloroplastic
Gene
RBCS, RBCS-C, OsI_018348
Organism
Oryza sativa subsp. indica (Rice)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at transcript leveli

Functioni

RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site By similarity.

Catalytic activityi

2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O.
3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2.

GO - Molecular functioni

  1. monooxygenase activity Source: UniProtKB-KW
  2. ribulose-bisphosphate carboxylase activity Source: UniProtKB-EC

GO - Biological processi

  1. chloroplast ribulose bisphosphate carboxylase complex biogenesis Source: EnsemblPlants/Gramene
  2. photorespiration Source: UniProtKB-KW
  3. reductive pentose-phosphate cycle Source: UniProtKB-KW
  4. response to blue light Source: EnsemblPlants/Gramene
  5. response to far red light Source: EnsemblPlants/Gramene
  6. response to red light Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Molecular functioni

Lyase, Monooxygenase, Oxidoreductase

Keywords - Biological processi

Calvin cycle, Carbon dioxide fixation, Photorespiration, Photosynthesis

Names & Taxonomyi

Protein namesi
Recommended name:
Ribulose bisphosphate carboxylase small chain, chloroplastic (EC:4.1.1.39)
Short name:
Ribulose bisphosphate carboxylase small chain C
Short name:
RuBisCO small subunit
Short name:
RuBisCO small subunit C
Gene namesi
Name:RBCS
Synonyms:RBCS-C
ORF Names:OsI_018348
OrganismiOryza sativa subsp. indica (Rice)
Taxonomic identifieri39946 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Organism-specific databases

GrameneiA2Y205.

Subcellular locationi

GO - Cellular componenti

  1. apoplast Source: EnsemblPlants/Gramene
  2. cell wall Source: EnsemblPlants/Gramene
  3. chloroplast envelope Source: EnsemblPlants/Gramene
  4. chloroplast stroma Source: EnsemblPlants/Gramene
  5. cytosolic ribosome Source: EnsemblPlants/Gramene
  6. membrane Source: EnsemblPlants/Gramene
  7. thylakoid Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 4747Chloroplast
Add
BLAST
Chaini48 – 175128Ribulose bisphosphate carboxylase small chain, chloroplastic
PRO_0000302886Add
BLAST

Proteomic databases

PRIDEiA2Y205.

Interactioni

Subunit structurei

8 large chains + 8 small chains.

Protein-protein interaction databases

STRINGi39947.LOC_Os12g17600.1.

Structurei

3D structure databases

ProteinModelPortaliA2Y205.
SMRiA2Y205. Positions 49-169.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni60 – 645Interaction with large subunit

Sequence similaritiesi

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiCOG4451.
HOGENOMiHOG000141332.

Family and domain databases

Gene3Di3.30.190.10. 1 hit.
InterProiIPR024681. RuBisCO_sc.
IPR000894. RuBisCO_sc_dom.
IPR024680. RuBisCO_ssu_N.
[Graphical view]
PfamiPF12338. RbcS. 1 hit.
PF00101. RuBisCO_small. 1 hit.
[Graphical view]
PRINTSiPR00152. RUBISCOSMALL.
SUPFAMiSSF55239. SSF55239. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

A2Y205-1 [UniParc]FASTAAdd to Basket

« Hide

MAPSVMASSA TTVAPFQGLK STAGMPVARR SGNSSFGNVS NGGRIRCMQV    50
WPIEGIKKFE TLSYLPPLTV EDLLKQIEYL LRSKWVPCLE FSKVGFVYRE 100
NHRSPGYYDG RYWTMWKLPM FGCTDATQVL KELEEAKKAY PDAFVRIIGF 150
DNVRQVQLIS FIAYKPPGCE ESGGN 175
Length:175
Mass (Da):19,647
Last modified:September 11, 2007 - v2
Checksum:iE95B68AC3178A7D7
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti103 – 1031R → K in EAY97115. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF017364 mRNA. Translation: AAB70544.1.
CM000130 Genomic DNA. Translation: EAY97115.1.
EF576320 mRNA. Translation: ABR25908.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF017364 mRNA. Translation: AAB70544.1 .
CM000130 Genomic DNA. Translation: EAY97115.1 .
EF576320 mRNA. Translation: ABR25908.1 .

3D structure databases

ProteinModelPortali A2Y205.
SMRi A2Y205. Positions 49-169.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 39947.LOC_Os12g17600.1.

Proteomic databases

PRIDEi A2Y205.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Organism-specific databases

Gramenei A2Y205.

Phylogenomic databases

eggNOGi COG4451.
HOGENOMi HOG000141332.

Family and domain databases

Gene3Di 3.30.190.10. 1 hit.
InterProi IPR024681. RuBisCO_sc.
IPR000894. RuBisCO_sc_dom.
IPR024680. RuBisCO_ssu_N.
[Graphical view ]
Pfami PF12338. RbcS. 1 hit.
PF00101. RuBisCO_small. 1 hit.
[Graphical view ]
PRINTSi PR00152. RUBISCOSMALL.
SUPFAMi SSF55239. SSF55239. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Characterization of ribulose 1,5-bisphosphate carboxylase small subunit from rice."
    Lee M.C., Kim C.S., Eun M.Y.
    Submitted (SEP-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. Milyang 23.
  2. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
    PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. 93-11.
  3. "A comparative transcriptome map of early and late salinity stress responses in contrasting genotypes of Oryza sativa L."
    Kumari S., Panjabi V., Singla-Pareek S.L., Sopory S.K., Pareek A.
    Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Shoot.

Entry informationi

Entry nameiRBS1_ORYSI
AccessioniPrimary (citable) accession number: A2Y205
Secondary accession number(s): A6N0Y8
, O65105, P05347, P18567, Q2QU37
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 11, 2007
Last sequence update: September 11, 2007
Last modified: April 16, 2014
This is version 40 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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