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A2Y040

- RPAP2_ORYSI

UniProt

A2Y040 - RPAP2_ORYSI

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Protein

Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog

Gene
OsI_18345
Organism
Oryza sativa subsp. indica (Rice)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Putative RNA polymerase II subunit B1 C-terminal domain (CTD) phosphatase involved in RNA polymerase II transcription regulation By similarity.

Catalytic activityi

[a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri43 – 13189RTR1-typeAdd
BLAST

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. phosphoprotein phosphatase activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protein phosphatase

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog (EC:3.1.3.16)
Alternative name(s):
RNA polymerase II-associated protein 2 homolog
Gene namesi
ORF Names:OsI_18345
OrganismiOryza sativa subsp. indica (Rice)
Taxonomic identifieri39946 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Organism-specific databases

GrameneiA2Y040.

Subcellular locationi

Nucleus By similarity

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 726726Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homologPRO_0000416293Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os05g04370.1.

Family & Domainsi

Sequence similaritiesi

Belongs to the RPAP2 family.

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiNOG241465.
HOGENOMiHOG000241200.

Family and domain databases

InterProiIPR007308. DUF408.
[Graphical view]
PfamiPF04181. RPAP2_Rtr1. 1 hit.
[Graphical view]
PROSITEiPS51479. ZF_RTR1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A2Y040-1 [UniParc]FASTAAdd to Basket

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MGPTTATDAG ARMKPTTVAS AVHRVQMALY DGAAASREPL LRAAASLLSG    50
PDYADVVTER SIADACGYPA CPNPLPSEDA RGKAAPRFRI SLREHRVYDL 100
EEARKFCSER CLVASAAFGA SLPPDRPFGV SPDRLDALVA LFEGGGGGGG 150
DGGLALGFGA SGDGKEVEEG RKVEIMEKEA AGTGEVTLQE WIGPSDAIEG 200
YVPRRDRVVG GPKKEAKQND ACSAEQSSNI NVDSRNASSG ESGMVLTENT 250
KAKKKEATKT PLKMFKQDED NDMLSSCISD SIVKQLEDVV LEEKKDKKKN 300
KAAKGTSRVG KSKPAKRPVG RDGHEVDFTS TIIMGDHGSE MMDHGALGQY 350
NFSSSILANE QPSSSQYAAI DSVQAYTEEL DELFSNAVNI AKDETSDDSG 400
RCTLRSSLKA VGSKNAGRSV KWADENGSVL ETSRAFVSHS SKSQESMDSS 450
VRRESAEACA AALIEAAEAI SSGTSEVEDA VSKAGIIILP DMVNQQQYNN 500
DYDNDKDAGE NEIFEIDRGV VKWPKKTVLL DTDMFDVDDS WHDTPPEGFS 550
LTLSSFATMW AALFGWVSRS SLAYVYGLDE SSMEDLLIAG GRECPQKRVL 600
NDGHSSEIRR ALDTCVCNAL PVLVSNLRMQ IPVSKLEITL GYLLDTMSFV 650
DALPSLRSRQ WQLMVLVLLD ALSLHRLPAL APIMSDSKLL QKLLNSAQVS 700
REEYDSMIDL LLPFGRSTQS QASLPS 726
Length:726
Mass (Da):78,243
Last modified:March 20, 2007 - v1
Checksum:i196556A6DD98BC51
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000130 Genomic DNA. Translation: EAY96450.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000130 Genomic DNA. Translation: EAY96450.1 .

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 39947.LOC_Os05g04370.1.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Organism-specific databases

Gramenei A2Y040.

Phylogenomic databases

eggNOGi NOG241465.
HOGENOMi HOG000241200.

Family and domain databases

InterProi IPR007308. DUF408.
[Graphical view ]
Pfami PF04181. RPAP2_Rtr1. 1 hit.
[Graphical view ]
PROSITEi PS51479. ZF_RTR1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
    PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. 93-11.

Entry informationi

Entry nameiRPAP2_ORYSI
AccessioniPrimary (citable) accession number: A2Y040
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 21, 2012
Last sequence update: March 20, 2007
Last modified: April 16, 2014
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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