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Protein

Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog

Gene

OsI_18345

Organism
Oryza sativa subsp. indica (Rice)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Putative RNA polymerase II subunit B1 C-terminal domain (CTD) phosphatase involved in RNA polymerase II transcription regulation.By similarity

Catalytic activityi

[a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi66ZincPROSITE-ProRule annotation1
Metal bindingi71ZincPROSITE-ProRule annotation1
Metal bindingi107ZincPROSITE-ProRule annotation1
Metal bindingi111ZincPROSITE-ProRule annotation1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri43 – 131RTR1-typePROSITE-ProRule annotationAdd BLAST89

GO - Molecular functioni

Keywordsi

Molecular functionHydrolase, Protein phosphatase
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog (EC:3.1.3.16)
Alternative name(s):
RNA polymerase II-associated protein 2 homolog
Gene namesi
ORF Names:OsI_18345
OrganismiOryza sativa subsp. indica (Rice)
Taxonomic identifieri39946 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000007015 Componenti: Chromosome 5

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004162931 – 726Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homologAdd BLAST726

Expressioni

Gene expression databases

ExpressionAtlasiA2Y040 differential

Interactioni

Protein-protein interaction databases

STRINGi39946.BGIOSGA018860-PA

Structurei

3D structure databases

SMRiA2Y040
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RPAP2 family.Curated

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri43 – 131RTR1-typePROSITE-ProRule annotationAdd BLAST89

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG4780 Eukaryota
ENOG410ZZZC LUCA
HOGENOMiHOG000241200
OMAiHETYMYC
OrthoDBiEOG093604TT

Family and domain databases

Gene3Di1.25.40.820, 1 hit
InterProiView protein in InterPro
IPR007308 Rtr1/RPAP2
IPR038534 Rtr1/RPAP2_sf
PfamiView protein in Pfam
PF04181 RPAP2_Rtr1, 1 hit
PROSITEiView protein in PROSITE
PS51479 ZF_RTR1, 1 hit

Sequencei

Sequence statusi: Complete.

A2Y040-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGPTTATDAG ARMKPTTVAS AVHRVQMALY DGAAASREPL LRAAASLLSG
60 70 80 90 100
PDYADVVTER SIADACGYPA CPNPLPSEDA RGKAAPRFRI SLREHRVYDL
110 120 130 140 150
EEARKFCSER CLVASAAFGA SLPPDRPFGV SPDRLDALVA LFEGGGGGGG
160 170 180 190 200
DGGLALGFGA SGDGKEVEEG RKVEIMEKEA AGTGEVTLQE WIGPSDAIEG
210 220 230 240 250
YVPRRDRVVG GPKKEAKQND ACSAEQSSNI NVDSRNASSG ESGMVLTENT
260 270 280 290 300
KAKKKEATKT PLKMFKQDED NDMLSSCISD SIVKQLEDVV LEEKKDKKKN
310 320 330 340 350
KAAKGTSRVG KSKPAKRPVG RDGHEVDFTS TIIMGDHGSE MMDHGALGQY
360 370 380 390 400
NFSSSILANE QPSSSQYAAI DSVQAYTEEL DELFSNAVNI AKDETSDDSG
410 420 430 440 450
RCTLRSSLKA VGSKNAGRSV KWADENGSVL ETSRAFVSHS SKSQESMDSS
460 470 480 490 500
VRRESAEACA AALIEAAEAI SSGTSEVEDA VSKAGIIILP DMVNQQQYNN
510 520 530 540 550
DYDNDKDAGE NEIFEIDRGV VKWPKKTVLL DTDMFDVDDS WHDTPPEGFS
560 570 580 590 600
LTLSSFATMW AALFGWVSRS SLAYVYGLDE SSMEDLLIAG GRECPQKRVL
610 620 630 640 650
NDGHSSEIRR ALDTCVCNAL PVLVSNLRMQ IPVSKLEITL GYLLDTMSFV
660 670 680 690 700
DALPSLRSRQ WQLMVLVLLD ALSLHRLPAL APIMSDSKLL QKLLNSAQVS
710 720
REEYDSMIDL LLPFGRSTQS QASLPS
Length:726
Mass (Da):78,243
Last modified:March 20, 2007 - v1
Checksum:i196556A6DD98BC51
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000130 Genomic DNA Translation: EAY96450.1

Genome annotation databases

EnsemblPlantsiBGIOSGA018860-TA; BGIOSGA018860-PA; BGIOSGA018860
GrameneiBGIOSGA018860-TA; BGIOSGA018860-PA; BGIOSGA018860

Similar proteinsi

Entry informationi

Entry nameiRPAP2_ORYSI
AccessioniPrimary (citable) accession number: A2Y040
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 21, 2012
Last sequence update: March 20, 2007
Last modified: May 23, 2018
This is version 43 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

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