A2Y040 (RPAP2_ORYSI) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
EC=3.1.3.16

Alternative name(s):
RNA polymerase II-associated protein 2 homolog

Gene names

ORF Names:

OsI_18345

Organism

Oryza sativa subsp. indica (Rice)

Taxonomic identifier

39946 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › Liliopsida › commelinids › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza › Oryza sativa

Protein attributes

Sequence length	726 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Function	Putative RNA polymerase II subunit B1 C-terminal domain (CTD) phosphatase involved in RNA polymerase II transcription regulation By similarity.
Catalytic activity	A phosphoprotein + H2O = a protein + phosphate.
Subcellular location	Nucleus By similarity.
Sequence similarities	Belongs to the RPAP2 family. Contains 1 RTR1-type zinc finger.

Ontologies

Keywords
Cellular component	Nucleus
Domain	Zinc-finger
Ligand	Metal-binding Zinc
Molecular function	Hydrolase Protein phosphatase
Gene Ontology (GO)
Cellular_component	nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW phosphoprotein phosphatase activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 726	726	Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog		PRO_0000416293
Regions
	Zinc finger	43 – 131	89	RTR1-type

Sequences

	Sequence		Length	Mass (Da)
	A2Y040 [UniParc]. Last modified March 20, 2007. Version 1. Checksum: 196556A6DD98BC51	FASTA	726	78,243
	10 20 30 40 50 60 MGPTTATDAG ARMKPTTVAS AVHRVQMALY DGAAASREPL LRAAASLLSG PDYADVVTER 70 80 90 100 110 120 SIADACGYPA CPNPLPSEDA RGKAAPRFRI SLREHRVYDL EEARKFCSER CLVASAAFGA 130 140 150 160 170 180 SLPPDRPFGV SPDRLDALVA LFEGGGGGGG DGGLALGFGA SGDGKEVEEG RKVEIMEKEA 190 200 210 220 230 240 AGTGEVTLQE WIGPSDAIEG YVPRRDRVVG GPKKEAKQND ACSAEQSSNI NVDSRNASSG 250 260 270 280 290 300 ESGMVLTENT KAKKKEATKT PLKMFKQDED NDMLSSCISD SIVKQLEDVV LEEKKDKKKN 310 320 330 340 350 360 KAAKGTSRVG KSKPAKRPVG RDGHEVDFTS TIIMGDHGSE MMDHGALGQY NFSSSILANE 370 380 390 400 410 420 QPSSSQYAAI DSVQAYTEEL DELFSNAVNI AKDETSDDSG RCTLRSSLKA VGSKNAGRSV 430 440 450 460 470 480 KWADENGSVL ETSRAFVSHS SKSQESMDSS VRRESAEACA AALIEAAEAI SSGTSEVEDA 490 500 510 520 530 540 VSKAGIIILP DMVNQQQYNN DYDNDKDAGE NEIFEIDRGV VKWPKKTVLL DTDMFDVDDS 550 560 570 580 590 600 WHDTPPEGFS LTLSSFATMW AALFGWVSRS SLAYVYGLDE SSMEDLLIAG GRECPQKRVL 610 620 630 640 650 660 NDGHSSEIRR ALDTCVCNAL PVLVSNLRMQ IPVSKLEITL GYLLDTMSFV DALPSLRSRQ 670 680 690 700 710 720 WQLMVLVLLD ALSLHRLPAL APIMSDSKLL QKLLNSAQVS REEYDSMIDL LLPFGRSTQS QASLPS

References

[1]

"The genomes of Oryza sativa: a history of duplications." Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L. , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H. PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. 93-11.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000130 Genomic DNA. Translation: EAY96450.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Organism-specific databases
Gramene	A2Y040.
Phylogenomic databases
eggNOG	NOG241465.
HOGENOM	HOG000241200.
Gene expression databases
ArrayExpress	A2Y040.
Family and domain databases
InterPro	IPR007308. DUF408. [Graphical view]
Pfam	PF04181. RPAP2_Rtr1. 1 hit. [Graphical view]
PROSITE	PS51479. ZF_RTR1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RPAP2_ORYSI

Accession

Primary (citable) accession number: A2Y040

Entry history

Integrated into UniProtKB/Swiss-Prot:	March 21, 2012
Last sequence update:	March 20, 2007
Last modified:	April 3, 2013
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program