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Protein

Glucosidase 2 subunit beta

Gene

OsI_01383

Organism
Oryza sativa subsp. indica (Rice)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Regulatory subunit of glucosidase II. May be required for defense response elicited by pathogen-associated molecular patterns (PAMPs) (By similarity).By similarity

Pathwayi

GO - Biological processi

  1. cellulose biosynthetic process Source: EnsemblPlants/Gramene
  2. defense response to bacterium Source: EnsemblPlants/Gramene
  3. Golgi vesicle transport Source: EnsemblPlants/Gramene
  4. methionine biosynthetic process Source: EnsemblPlants/Gramene
  5. N-glycan processing Source: EnsemblPlants/Gramene
  6. RNA splicing, via endonucleolytic cleavage and ligation Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Biological processi

Plant defense

Enzyme and pathway databases

UniPathwayiUPA00957.

Names & Taxonomyi

Protein namesi
Recommended name:
Glucosidase 2 subunit beta
Alternative name(s):
Glucosidase II subunit beta
Gene namesi
ORF Names:OsI_01383
OrganismiOryza sativa subsp. indica (Rice)
Taxonomic identifieri39946 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000007015 Componenti: Chromosome 1

Subcellular locationi

Endoplasmic reticulum PROSITE-ProRule annotation

GO - Cellular componenti

  1. endoplasmic reticulum Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Endoplasmic reticulum

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2020Sequence AnalysisAdd
BLAST
Chaini21 – 614594Glucosidase 2 subunit betaPRO_0000425978Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi115 – 1151N-linked (GlcNAc...)Sequence Analysis

Keywords - PTMi

Glycoprotein

Interactioni

Subunit structurei

Heterodimer of a catalytic alpha subunit and a beta subunit.By similarity

Protein-protein interaction databases

STRINGi39947.LOC_Os01g16970.1.

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi162 – 375214Glu-rich (acidic)Add
BLAST
Compositional biasi376 – 41843Asp-richAdd
BLAST

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiNOG289998.
HOGENOMiHOG000237767.
OMAiACPNGNF.

Family and domain databases

Gene3Di2.70.130.10. 1 hit.
InterProiIPR002172. LDrepeatLR_classA_rpt.
IPR009011. Man6P_isomerase_rcpt-bd_dom.
IPR028146. PRKCSH_N.
[Graphical view]
PfamiPF12999. PRKCSH-like. 1 hit.
[Graphical view]
SMARTiSM00192. LDLa. 1 hit.
[Graphical view]
SUPFAMiSSF50911. SSF50911. 1 hit.
PROSITEiPS00014. ER_TARGET. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

A2WNF5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGLHTLLLLL LLRISASAAA SRPPLDTLGI PPQDEAYFRG GVIRCRDGSG
60 70 80 90 100
RFARDKLNDD FCDCPDGTDE PGTSACPEGK FYCQNAGHSP ITIFSSRVND
110 120 130 140 150
GICDCCDGSD EYDSNVTCKN TCWEAGKAAR DKLKKKVATY KSGVVIRNQE
160 170 180 190 200
IQKAKVAFAK DEAELAKLKG EEKILQGLVD KLTEQKKLIE KAEEEERLRK
210 220 230 240 250
EKEEKRMKEE AEKQAADEKK ASDASQEVDS QENHETVQED ESKVAEHHDG
260 270 280 290 300
HATSHDNHTP ESESSVEQHD PESQDDISIK AAPADESPPE ETSAAPTKEQ
310 320 330 340 350
ESTPADSEGL SREELGRLVA SRWTGEKVDE VSKDDKNEHE AEHDMPEHSE
360 370 380 390 400
ETHEDESDVP ESAEDSYAGY HSEVEDDRHK YDDEDFSHES DDEYVDDHDE
410 420 430 440 450
HVASYKSDDD QKGDDHSDFT ASGQASWLDK IQQTVQNVLR TFNFFKTPVD
460 470 480 490 500
LSEASRVRKE YDDASSKLSK IQSRISTLTD KLKHDFGKEK EFYYFYDQCF
510 520 530 540 550
ESKEGKYVYK VCPFKKASQV EGHSTTSLGR WDKFEESYRV MQFSNGDRCW
560 570 580 590 600
NGPDRSLKVR LRCGLNNELN GVDEPSRCEY VAVLSTPALC DEQKLKELEQ
610
KLEASSNQRD HDEL
Length:614
Mass (Da):69,347
Last modified:March 20, 2007 - v1
Checksum:i39FD7FD2A379A357
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000126 Genomic DNA. Translation: EAY73501.1.

Genome annotation databases

EnsemblPlantsiBGIOSGA001897-TA; BGIOSGA001897-PA; BGIOSGA001897.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000126 Genomic DNA. Translation: EAY73501.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os01g16970.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiBGIOSGA001897-TA; BGIOSGA001897-PA; BGIOSGA001897.

Phylogenomic databases

eggNOGiNOG289998.
HOGENOMiHOG000237767.
OMAiACPNGNF.

Enzyme and pathway databases

UniPathwayiUPA00957.

Family and domain databases

Gene3Di2.70.130.10. 1 hit.
InterProiIPR002172. LDrepeatLR_classA_rpt.
IPR009011. Man6P_isomerase_rcpt-bd_dom.
IPR028146. PRKCSH_N.
[Graphical view]
PfamiPF12999. PRKCSH-like. 1 hit.
[Graphical view]
SMARTiSM00192. LDLa. 1 hit.
[Graphical view]
SUPFAMiSSF50911. SSF50911. 1 hit.
PROSITEiPS00014. ER_TARGET. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
    PLoS Biol. 3:266-281(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. 93-11.

Entry informationi

Entry nameiGLU2B_ORYSI
AccessioniPrimary (citable) accession number: A2WNF5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 16, 2014
Last sequence update: March 20, 2007
Last modified: April 1, 2015
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.