A2SQX8 (A2SQX8_METLZ) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Diaminopimelate epimerase HAMAP MF_00197
Short name=DAP epimerase HAMAP MF_00197
EC=5.1.1.7 HAMAP MF_00197

Gene names

Name:	dapF HAMAP MF_00197
Ordered Locus Names:	Mlab_0560

Organism

Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) [Complete proteome] [HAMAP]

Taxonomic identifier

410358 [NCBI]

Taxonomic lineage

Archaea › Euryarchaeota › Methanomicrobia › Methanomicrobiales › Methanocorpusculaceae › Methanocorpusculum

Protein attributes

Sequence length	274 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	LL-2,6-diaminoheptanedioate = meso-diaminoheptanedioate. HAMAP MF_00197
Pathway	Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; DL-2,6-diaminopimelate from LL-2,6-diaminopimelate: step 1/1. HAMAP MF_00197
Subcellular location	Cytoplasm By similarity HAMAP MF_00197.
Sequence similarities	Belongs to the diaminopimelate epimerase family. HAMAP MF_00197

Ontologies

Keywords
Biological process	Amino-acid biosynthesis Lysine biosynthesis HAMAP MF_00197
Cellular component	Cytoplasm HAMAP MF_00197
Molecular function	Isomerase HAMAP MF_00197 EMBL ABN06734.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	lysine biosynthetic process via diaminopimelate Inferred from electronic annotation. Source: HAMAP
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	diaminopimelate epimerase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Sites
	Active site	86	1	By similarity HAMAP MF_00197
	Active site	219	1	By similarity HAMAP MF_00197

Sequences

	Sequence		Length	Mass (Da)
	A2SQX8 [UniParc]. Last modified March 6, 2007. Version 1. Checksum: 753E9E0FAB303111	FASTA	274	29,570
	10 20 30 40 50 60 MTIKFPKHDL RSIAFTKLHG NGNDFILIDE MDQVIIPDDM KAQFAVVYCD RRFGIGGDGV 70 80 90 100 110 120 LFISKSDKAD IRMRLFQPDA SEAEMCGNGI RCLSKYAFDK EYAKKKAFSV ETLAGVMQVR 130 140 150 160 170 180 VGYDSDGDFM ATIDMGTAVY DESREIDGMT VYSVNTGVPH AVIFVGNVDG IAINEVAPKI 190 200 210 220 230 240 RHHPSFPKGT NVNFVQITGS SEIVIRTFER GVEGETLSCG TGSTASALIA AKTGKTHGSV 250 260 270 VHVKTVGGPL DITVGDIPQM TGPAATVFVG EIQY

References

[1]

"Complete genome sequence of Methanocorpusculum labreanum type strain Z." Anderson I.J., Sieprawska-Lupa M., Goltsman E., Lapidus A., Copeland A., Glavina Del Rio T., Tice H., Dalin E., Barry K., Pitluck S., Hauser L., Land M., Lucas S., Richardson P., Whitman W.B., Kyrpides N.C. Stand. Genomic Sci. 1:197-203(2009) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 43576 / DSM 4855 / Z.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000559 Genomic DNA. Translation: ABN06734.1.
RefSeq	YP_001030001.1. NC_008942.1.
3D structure databases
ProteinModelPortal	A2SQX8.
ModBase	Search...
Protein-protein interaction databases
STRING	A2SQX8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4796174.
GenomeReviews	Gene locus Mlab_0560 in contig CP000559_GR.
KEGG	mla:Mlab_0560.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	arNOG07445.
HOGENOM	HBG399442.
OMA	NTGVPHV.
PhylomeDB	A2SQX8.
ProtClustDB	PRK00450.
Family and domain databases
HAMAP	MF_00197. DAP_epimerase. [Tree]
InterPro	IPR001653. DAP_epimerase_DapF. [Graphical view]
KO	K01778.
Pfam	PF01678. DAP_epimerase. 2 hits. [Graphical view]
TIGRFAMs	TIGR00652. DapF. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A2SQX8_METLZ

Accession

Primary (citable) accession number: A2SQX8

Entry history

Integrated into UniProtKB/TrEMBL:	March 6, 2007
Last sequence update:	March 6, 2007
Last modified:	November 16, 2011
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)