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A2SMK3

- A2SMK3_METPP

UniProt

A2SMK3 - A2SMK3_METPP

Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module

Gene

Mpe_B0011

Organism
Methylibium petroleiphilum (strain PM1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 54 (01 Oct 2014)
      Sequence version 1 (06 Mar 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciMPET420662:GHBE-3884-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported
    Gene namesi
    Ordered Locus Names:Mpe_B0011Imported
    Encoded oniPlasmid RPME01Imported
    OrganismiMethylibium petroleiphilum (strain PM1)Imported
    Taxonomic identifieri420662 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesMethylibium
    ProteomesiUP000000366: Plasmid RPME01

    Interactioni

    Protein-protein interaction databases

    STRINGi420662.Mpe_B0011.

    Structurei

    3D structure databases

    ProteinModelPortaliA2SMK3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiDWTIRSI.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A2SMK3-1 [UniParc]FASTAAdd to Basket

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    MGRTAPSTQA NADTPLSRYN AKRNFKVTSE PAGVPAKRSG KSKALCFVIQ    50
    KHWASRLHYD FRLELDGVML SWAVPKGPSY DPALKQMAIH VEDHPISYNT 100
    FEGTIPKGQY GAGTVIIWDR GTWEPEGDPR EGMAKGKLIF KLHGQKLAGL 150
    WELVRISKPG EVKQEQWLLL KKRGDAWARP TSEYDVISAL PDSVVEKPLG 200
    PVEEREQRAG GTAAGTPGPS GEADLQLAVQ APLPAKLAPQ LATLASAVPS 250
    GGSWIVETKF DGYRMLARVD GDDVRLFTRN GNDWTSKLKT VAAAVKDLGL 300
    DSAWLDGEIV VINQAGVPDF NRLQNAIDNS RSKDISFFVF DVPFLGGMDL 350
    RKVPVASRRQ VLNELFEQRQ SEVVRFSEAF DVPPAHMLEA ACKMGLEGVM 400
    VKRADAPYVS SRTDTWLKLK CQQRQEFIVV GFTDRAGAPT EVGGLLLGYH 450
    EDGKLRYAGS VGTGWNSATG RELRSTLAKL QVEKPALEAG AVKPGRWSKR 500
    PAGVERWVKP TMVVEVAFSE WTPDGHVRHP TFRGVRTDKP ATQITREKAE 550
    RPEGPVTETA AAVAGKPRTS VKVTNPDRVI DPSTGFKKVD LVRYYESIAD 600
    WMLPHLKDRP VSLVRAPEGI TGEQFFQKHP ETKMPGMTEL DPALWPGHSS 650
    LLAVGSAEAL VSAAQMNVVE FHTWNSTIKR INEPDRVIFD LDPGEGVSWA 700
    HLQEAAVLMH TLLTELGLEA WLKTSGGKGL HVVVPLAPKL DYDAVKGFSQ 750
    AAVQHMAKTI PQRFVAKSGG SNRVGRIFID YLRNGHGQTT ASAFSARVRP 800
    GMGVSMPVSW EQLRELKSGS QWSIATAREY LSFQKSDPWA AYWTSKQTLT 850
    KAMRLLGYAP KKAA 864
    Length:864
    Mass (Da):94,968
    Last modified:March 6, 2007 - v1
    Checksum:iA6FC1BB4B2832984
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000556 Genomic DNA. Translation: ABM96792.1.
    RefSeqiYP_001023027.1. NC_008826.1.

    Genome annotation databases

    EnsemblBacteriaiABM96792; ABM96792; Mpe_B0011.
    GeneIDi4787614.
    KEGGimpt:Mpe_B0011.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000556 Genomic DNA. Translation: ABM96792.1 .
    RefSeqi YP_001023027.1. NC_008826.1.

    3D structure databases

    ProteinModelPortali A2SMK3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 420662.Mpe_B0011.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABM96792 ; ABM96792 ; Mpe_B0011 .
    GeneIDi 4787614.
    KEGGi mpt:Mpe_B0011.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi DWTIRSI.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci MPET420662:GHBE-3884-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Whole-genome analysis of the methyl tert-butyl ether-degrading beta-proteobacterium Methylibium petroleiphilum PM1."
      Kane S.R., Chakicherla A.Y., Chain P.S.G., Schmidt R., Shin M.W., Legler T.C., Scow K.M., Larimer F.W., Lucas S.M., Richardson P.M., Hristova K.R.
      J. Bacteriol. 189:1931-1945(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: PM1Imported.

    Entry informationi

    Entry nameiA2SMK3_METPP
    AccessioniPrimary (citable) accession number: A2SMK3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 6, 2007
    Last sequence update: March 6, 2007
    Last modified: October 1, 2014
    This is version 54 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, PlasmidImported, Reference proteomeImported

    External Data

    Dasty 3