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A2SMK3 (A2SMK3_METPP) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module EMBL ABM96792.1
Gene names
Ordered Locus Names:Mpe_B0011 EMBL ABM96792.1
Encoded onPlasmid RPME01 EMBL ABM96792.1
OrganismMethylibium petroleiphilum (strain PM1) [Complete proteome] [HAMAP] EMBL ABM96792.1
Taxonomic identifier420662 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Methylibium ›

Protein attributes

Sequence length864 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABM96792.1
   Technical termComplete proteome
Plasmid EMBL ABM96792.1
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A2SMK3 [UniParc].

Last modified March 6, 2007. Version 1.
Checksum: A6FC1BB4B2832984

FASTA86494,968
        10         20         30         40         50         60 
MGRTAPSTQA NADTPLSRYN AKRNFKVTSE PAGVPAKRSG KSKALCFVIQ KHWASRLHYD 

        70         80         90        100        110        120 
FRLELDGVML SWAVPKGPSY DPALKQMAIH VEDHPISYNT FEGTIPKGQY GAGTVIIWDR 

       130        140        150        160        170        180 
GTWEPEGDPR EGMAKGKLIF KLHGQKLAGL WELVRISKPG EVKQEQWLLL KKRGDAWARP 

       190        200        210        220        230        240 
TSEYDVISAL PDSVVEKPLG PVEEREQRAG GTAAGTPGPS GEADLQLAVQ APLPAKLAPQ 

       250        260        270        280        290        300 
LATLASAVPS GGSWIVETKF DGYRMLARVD GDDVRLFTRN GNDWTSKLKT VAAAVKDLGL 

       310        320        330        340        350        360 
DSAWLDGEIV VINQAGVPDF NRLQNAIDNS RSKDISFFVF DVPFLGGMDL RKVPVASRRQ 

       370        380        390        400        410        420 
VLNELFEQRQ SEVVRFSEAF DVPPAHMLEA ACKMGLEGVM VKRADAPYVS SRTDTWLKLK 

       430        440        450        460        470        480 
CQQRQEFIVV GFTDRAGAPT EVGGLLLGYH EDGKLRYAGS VGTGWNSATG RELRSTLAKL 

       490        500        510        520        530        540 
QVEKPALEAG AVKPGRWSKR PAGVERWVKP TMVVEVAFSE WTPDGHVRHP TFRGVRTDKP 

       550        560        570        580        590        600 
ATQITREKAE RPEGPVTETA AAVAGKPRTS VKVTNPDRVI DPSTGFKKVD LVRYYESIAD 

       610        620        630        640        650        660 
WMLPHLKDRP VSLVRAPEGI TGEQFFQKHP ETKMPGMTEL DPALWPGHSS LLAVGSAEAL 

       670        680        690        700        710        720 
VSAAQMNVVE FHTWNSTIKR INEPDRVIFD LDPGEGVSWA HLQEAAVLMH TLLTELGLEA 

       730        740        750        760        770        780 
WLKTSGGKGL HVVVPLAPKL DYDAVKGFSQ AAVQHMAKTI PQRFVAKSGG SNRVGRIFID 

       790        800        810        820        830        840 
YLRNGHGQTT ASAFSARVRP GMGVSMPVSW EQLRELKSGS QWSIATAREY LSFQKSDPWA 

       850        860 
AYWTSKQTLT KAMRLLGYAP KKAA

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References

[1]"Whole-genome analysis of the methyl tert-butyl ether-degrading beta-proteobacterium Methylibium petroleiphilum PM1."
Kane S.R., Chakicherla A.Y., Chain P.S., Schmidt R., Shin M.W., Legler T.C., Scow K.M., Larimer F.W., Lucas S.M., Richardson P.M., Hristova K.R.
J. Bacteriol. 189:1931-1945(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PM1 EMBL ABM96792.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000556 Genomic DNA. Translation: ABM96792.1.
RefSeqYP_001023027.1. NC_008826.1.

3D structure databases

ProteinModelPortalA2SMK3.
ModBaseSearch...

Protein-protein interaction databases

STRING420662.Mpe_B0011.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABM96792; ABM96792; Mpe_B0011.
GeneID4787614.
KEGGmpt:Mpe_B0011.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMAVSMPITW.
ProtClustDBPRK05972.

Enzyme and pathway databases

BioCycMPET420662:GHBE-38-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA2SMK3_METPP
AccessionPrimary (citable) accession number: A2SMK3
Entry history
Integrated into UniProtKB/TrEMBL: March 6, 2007
Last sequence update: March 6, 2007
Last modified: May 1, 2013
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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