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A2SMK3

- A2SMK3_METPP

UniProt

A2SMK3 - A2SMK3_METPP

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Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module

Gene

Mpe_B0011

Organism
Methylibium petroleiphilum (strain PM1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMPET420662:GHBE-3884-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported
Gene namesi
Ordered Locus Names:Mpe_B0011Imported
Encoded oniPlasmid RPME01Imported
OrganismiMethylibium petroleiphilum (strain PM1)Imported
Taxonomic identifieri420662 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesMethylibium
ProteomesiUP000000366: Plasmid RPME01

Interactioni

Protein-protein interaction databases

STRINGi420662.Mpe_B0011.

Structurei

3D structure databases

ProteinModelPortaliA2SMK3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiDWTIRSI.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A2SMK3 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MGRTAPSTQA NADTPLSRYN AKRNFKVTSE PAGVPAKRSG KSKALCFVIQ
60 70 80 90 100
KHWASRLHYD FRLELDGVML SWAVPKGPSY DPALKQMAIH VEDHPISYNT
110 120 130 140 150
FEGTIPKGQY GAGTVIIWDR GTWEPEGDPR EGMAKGKLIF KLHGQKLAGL
160 170 180 190 200
WELVRISKPG EVKQEQWLLL KKRGDAWARP TSEYDVISAL PDSVVEKPLG
210 220 230 240 250
PVEEREQRAG GTAAGTPGPS GEADLQLAVQ APLPAKLAPQ LATLASAVPS
260 270 280 290 300
GGSWIVETKF DGYRMLARVD GDDVRLFTRN GNDWTSKLKT VAAAVKDLGL
310 320 330 340 350
DSAWLDGEIV VINQAGVPDF NRLQNAIDNS RSKDISFFVF DVPFLGGMDL
360 370 380 390 400
RKVPVASRRQ VLNELFEQRQ SEVVRFSEAF DVPPAHMLEA ACKMGLEGVM
410 420 430 440 450
VKRADAPYVS SRTDTWLKLK CQQRQEFIVV GFTDRAGAPT EVGGLLLGYH
460 470 480 490 500
EDGKLRYAGS VGTGWNSATG RELRSTLAKL QVEKPALEAG AVKPGRWSKR
510 520 530 540 550
PAGVERWVKP TMVVEVAFSE WTPDGHVRHP TFRGVRTDKP ATQITREKAE
560 570 580 590 600
RPEGPVTETA AAVAGKPRTS VKVTNPDRVI DPSTGFKKVD LVRYYESIAD
610 620 630 640 650
WMLPHLKDRP VSLVRAPEGI TGEQFFQKHP ETKMPGMTEL DPALWPGHSS
660 670 680 690 700
LLAVGSAEAL VSAAQMNVVE FHTWNSTIKR INEPDRVIFD LDPGEGVSWA
710 720 730 740 750
HLQEAAVLMH TLLTELGLEA WLKTSGGKGL HVVVPLAPKL DYDAVKGFSQ
760 770 780 790 800
AAVQHMAKTI PQRFVAKSGG SNRVGRIFID YLRNGHGQTT ASAFSARVRP
810 820 830 840 850
GMGVSMPVSW EQLRELKSGS QWSIATAREY LSFQKSDPWA AYWTSKQTLT
860
KAMRLLGYAP KKAA
Length:864
Mass (Da):94,968
Last modified:March 6, 2007 - v1
Checksum:iA6FC1BB4B2832984
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000556 Genomic DNA. Translation: ABM96792.1.
RefSeqiYP_001023027.1. NC_008826.1.

Genome annotation databases

EnsemblBacteriaiABM96792; ABM96792; Mpe_B0011.
GeneIDi4787614.
KEGGimpt:Mpe_B0011.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000556 Genomic DNA. Translation: ABM96792.1 .
RefSeqi YP_001023027.1. NC_008826.1.

3D structure databases

ProteinModelPortali A2SMK3.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 420662.Mpe_B0011.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABM96792 ; ABM96792 ; Mpe_B0011 .
GeneIDi 4787614.
KEGGi mpt:Mpe_B0011.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi DWTIRSI.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci MPET420662:GHBE-3884-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Whole-genome analysis of the methyl tert-butyl ether-degrading beta-proteobacterium Methylibium petroleiphilum PM1."
    Kane S.R., Chakicherla A.Y., Chain P.S.G., Schmidt R., Shin M.W., Legler T.C., Scow K.M., Larimer F.W., Lucas S.M., Richardson P.M., Hristova K.R.
    J. Bacteriol. 189:1931-1945(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PM1Imported.

Entry informationi

Entry nameiA2SMK3_METPP
AccessioniPrimary (citable) accession number: A2SMK3
Entry historyi
Integrated into UniProtKB/TrEMBL: March 6, 2007
Last sequence update: March 6, 2007
Last modified: October 1, 2014
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, PlasmidImported, Reference proteomeImported

External Data

Dasty 3