A2SLF5 (A2SLF5_METPP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
50S ribosomal protein L23 HAMAP-Rule MF_01369

Gene names

Name:	rplW HAMAP-Rule MF_01369
Ordered Locus Names:	Mpe_A3441 EMBL ABM96394.1

Organism

Methylibium petroleiphilum (strain PM1) [Complete proteome] [HAMAP] EMBL ABM96394.1

Taxonomic identifier

420662 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › unclassified Burkholderiales › Burkholderiales Genera incertae sedis › Methylibium › Methylibium petroleiphilum

Protein attributes

Sequence length	104 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome By similarity. HAMAP-Rule MF_01369
Subunit structure	Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome By similarity. HAMAP-Rule MF_01369
Sequence similarities	Belongs to the ribosomal protein L23P family. HAMAP-Rule MF_01369

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding HAMAP-Rule MF_01369
Molecular function	Ribonucleoprotein Ribosomal protein HAMAP-Rule MF_01369 EMBL ABM96394.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	nucleotide binding Inferred from electronic annotation. Source: InterPro rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A2SLF5 [UniParc]. Last modified March 6, 2007. Version 1. Checksum: 5A878427767D6387	FASTA	104	11,347
	10 20 30 40 50 60 MSALKFDEGR LMKVLVAPIV SEKATAVAES HNQVLFKVLQ DATKPEIKAA VELLFKVEVD 70 80 90 100 KVSVVNTKGK TKRFGKGVGR RDNVRKAYVC LKAGQELNFS GEAA

References

[1]

"Whole-genome analysis of the methyl tert-butyl ether-degrading beta-proteobacterium Methylibium petroleiphilum PM1." Kane S.R., Chakicherla A.Y., Chain P.S., Schmidt R., Shin M.W., Legler T.C., Scow K.M., Larimer F.W., Lucas S.M., Richardson P.M., Hristova K.R. J. Bacteriol. 189:1931-1945(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: PM1 EMBL ABM96394.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000555 Genomic DNA. Translation: ABM96394.1.
RefSeq	YP_001022629.1. NC_008825.1.
3D structure databases
ProteinModelPortal	A2SLF5.
ModBase	Search...
Protein-protein interaction databases
STRING	420662.Mpe_A3441.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABM96394; ABM96394; Mpe_A3441.
GeneID	4786315.
KEGG	mpt:Mpe_A3441.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0089.
HOGENOM	HOG000231364.
KO	K02892.
OMA	QISEKAT.
ProtClustDB	PRK05738.
Enzyme and pathway databases
BioCyc	MPET420662:GHBE-4156-MONOMER.
Family and domain databases
Gene3D	3.30.70.330. 1 hit.
HAMAP	MF_01369_B. Ribosomal_L23_B.
InterPro	IPR012677. Nucleotide-bd_a/b_plait. IPR012678. Ribosomal_L23/L15e_core_dom. IPR013025. Ribosomal_L25/23. [Graphical view]
Pfam	PF00276. Ribosomal_L23. 1 hit. [Graphical view]
SUPFAM	SSF54189. L23_L15e_core. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A2SLF5_METPP

Accession

Primary (citable) accession number: A2SLF5

Entry history

Integrated into UniProtKB/TrEMBL:	March 6, 2007
Last sequence update:	March 6, 2007
Last modified:	May 1, 2013
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)