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A2SLF5 (A2SLF5_METPP) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 53. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length104 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome By similarity. HAMAP-Rule MF_01369

Subunit structure

Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome By similarity. HAMAP-Rule MF_01369

Sequence similarities

Belongs to the ribosomal protein L23P family. HAMAP-Rule MF_01369

Ontologies

Sequences

Sequence LengthMass (Da)Tools
A2SLF5 [UniParc].

Last modified March 6, 2007. Version 1.
Checksum: 5A878427767D6387

FASTA10411,347
        10         20         30         40         50         60 
MSALKFDEGR LMKVLVAPIV SEKATAVAES HNQVLFKVLQ DATKPEIKAA VELLFKVEVD 

        70         80         90        100 
KVSVVNTKGK TKRFGKGVGR RDNVRKAYVC LKAGQELNFS GEAA 

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References

[1]"Whole-genome analysis of the methyl tert-butyl ether-degrading beta-proteobacterium Methylibium petroleiphilum PM1."
Kane S.R., Chakicherla A.Y., Chain P.S., Schmidt R., Shin M.W., Legler T.C., Scow K.M., Larimer F.W., Lucas S.M., Richardson P.M., Hristova K.R.
J. Bacteriol. 189:1931-1945(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PM1 EMBL ABM96394.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000555 Genomic DNA. Translation: ABM96394.1.
RefSeqYP_001022629.1. NC_008825.1.

3D structure databases

ProteinModelPortalA2SLF5.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING420662.Mpe_A3441.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABM96394; ABM96394; Mpe_A3441.
GeneID4786315.
KEGGmpt:Mpe_A3441.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0089.
HOGENOMHOG000231364.
KOK02892.
OMAFGRRSDW.
OrthoDBEOG6HTP4P.

Enzyme and pathway databases

BioCycMPET420662:GHBE-3481-MONOMER.

Family and domain databases

Gene3D3.30.70.330. 1 hit.
HAMAPMF_01369_B. Ribosomal_L23_B.
InterProIPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR013025. Ribosomal_L25/23.
[Graphical view]
PfamPF00276. Ribosomal_L23. 1 hit.
[Graphical view]
SUPFAMSSF54189. SSF54189. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA2SLF5_METPP
AccessionPrimary (citable) accession number: A2SLF5
Entry history
Integrated into UniProtKB/TrEMBL: March 6, 2007
Last sequence update: March 6, 2007
Last modified: May 14, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)