A2SFZ1 (A2SFZ1_METPP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase, ATP-dependent, putative EMBL ABM94480.1
EC=6.5.1.1 EMBL ABM94480.1

Gene names

Ordered Locus Names:

Mpe_A1518 EMBL ABM94480.1

Organism

Methylibium petroleiphilum (strain PM1) [Complete proteome] [HAMAP] EMBL ABM94480.1

Taxonomic identifier

420662 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › unclassified Burkholderiales › Burkholderiales Genera incertae sedis › Methylibium › Methylibium petroleiphilum

Protein attributes

Sequence length	542 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABM94480.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A2SFZ1 [UniParc]. Last modified March 6, 2007. Version 1. Checksum: D7F88AB218D506A3	FASTA	542	59,485
	10 20 30 40 50 60 MRDFARLYAA LDATTSTHEK LEALTAYFRA APARHAAWAA YFLAGGKPRQ AVPTALLRQL 70 80 90 100 110 120 AAERAGLPPW LFDACYEAVG DLAETIALVL PPPVRDSALG LDDWMRERIG PLRGAPPEQV 130 140 150 160 170 180 RTALFDAWDE LDTPGRFLLG KLIGGGFRVG VSRLLLTRAL AAVAGLDAKL IAQRLMGWTD 190 200 210 220 230 240 KGAQPTADAY AALLAPEAAT GDASPGGQPY PFFLAHPLQA EPQTLGALAD WQAEWKYDGI 250 260 270 280 290 300 RAQLVRRGGQ SWLWSRGEEL ITDRFPELAK LSLPDGAVID GEIVVWQDSR PAPFAALQRR 310 320 330 340 350 360 IGRKTLGARL LQELPAVLIA YDLLEQEGVD RRDEPQHLRR MRLEQLISAT ADPALQLSPQ 370 380 390 400 410 420 VQAPDWAALA VLRDTARERG VEGLMLKARE ARYGVGRTKD VGVWWKWKVD PYAVDAVLVY 430 440 450 460 470 480 AQAGHGRRAS LYTDYTFAVW DAPPDGAPGE RRLVPFAKAY SGLSDAEIAR VDAVIRKTTI 490 500 510 520 530 540 EKFGPVRSVR PTLVFEIGFE GIALSTRHRA GVAVRFPRIL RTRPDKPVEE ADTLATLKGL LT

References

[1]

"Whole-genome analysis of the methyl tert-butyl ether-degrading beta-proteobacterium Methylibium petroleiphilum PM1." Kane S.R., Chakicherla A.Y., Chain P.S., Schmidt R., Shin M.W., Legler T.C., Scow K.M., Larimer F.W., Lucas S.M., Richardson P.M., Hristova K.R. J. Bacteriol. 189:1931-1945(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: PM1 EMBL ABM94480.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000555 Genomic DNA. Translation: ABM94480.1.
RefSeq	YP_001020715.1. NC_008825.1.
3D structure databases
ProteinModelPortal	A2SFZ1.
ModBase	Search...
Protein-protein interaction databases
STRING	420662.Mpe_A1518.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABM94480; ABM94480; Mpe_A1518.
GeneID	4783536.
KEGG	mpt:Mpe_A1518.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
ProtClustDB	PRK09247.
Enzyme and pathway databases
BioCyc	MPET420662:GHBE-2235-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A2SFZ1_METPP

Accession

Primary (citable) accession number: A2SFZ1

Entry history

Integrated into UniProtKB/TrEMBL:	March 6, 2007
Last sequence update:	March 6, 2007
Last modified:	May 1, 2013
This is version 48 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)