A2RRP1 (NBAS_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 56.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Neuroblastoma-amplified sequence Alternative name(s): Neuroblastoma-amplified gene protein | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 2371 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Subcellular location | |
| Tissue specificity | Broadly expressed, with highest levels in heart and skeletal muscle, and lowest levels in liver, small intestine and thymus. Well expressed in retinal ganglion cells, epidermal skin cells, and leukocytes. Up-regulated together with N-myc in some neuroblastoma cell lines. Ref.1 Ref.4 Ref.6 Ref.11 |
| Involvement in disease | Short stature, optic nerve atrophy, and Pelger-Huet anomaly (SOPH) [MIM:614800]: An autosomal recessive syndrome characterized by severe postnatal growth retardation, facial dysmorphism with senile face, small hands and feet, normal intelligence, abnormal nuclear shape in neutrophil granulocytes (Pelger-Huet anomaly), and optic atrophy with loss of visual acuity and color vision. |
| Sequence similarities | Contains 2 WD repeats. |
| Sequence caution | The sequence AAD18133.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence AAD18133.1 differs from that shown. Reason: Erroneous termination at position 2372. Translated as stop. The sequence CAB43382.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Cytoplasm |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Disease | Disease mutation Dwarfism |
| Domain | Repeat WD repeat |
| PTM | Acetylation Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Cellular_component | cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell |
| Complete GO annotation... | |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: A2RRP1-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: A2RRP1-2) The sequence of this isoform differs from the canonical sequence as follows: 860-979: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 2371 | 2371 | Neuroblastoma-amplified sequence | PRO_0000292806 | |||||
Regions | |||||||||
| Repeat | 130 – 169 | 40 | WD 1 | ||||||
| Repeat | 316 – 355 | 40 | WD 2 | ||||||
| Compositional bias | 1421 – 1425 | 5 | Poly-Thr | ||||||
| Compositional bias | 2242 – 2247 | 6 | Poly-Leu | ||||||
Amino acid modifications | |||||||||
| Modified residue | 473 | 1 | Phosphoserine Ref.7 Ref.9 Ref.13 | ||||||
| Modified residue | 475 | 1 | Phosphoserine Ref.7 Ref.9 Ref.13 | ||||||
| Modified residue | 1057 | 1 | N6-acetyllysine Ref.10 | ||||||
Natural variations | |||||||||
| Alternative sequence | 860 – 979 | 120 | Missing in isoform 2. | VSP_026445 | |||||
| Natural variant | 44 | 1 | Q → E. Ref.11 | VAR_068954 | |||||
| Natural variant | 243 | 1 | I → V. Ref.2 Corresponds to variant rs13029846 [ dbSNP | Ensembl ]. | VAR_057611 | |||||
| Natural variant | 655 | 1 | K → R. Ref.1 Ref.2 Corresponds to variant rs4668909 [ dbSNP | Ensembl ]. | VAR_057612 | |||||
| Natural variant | 949 | 1 | V → L. Ref.11 | VAR_068955 | |||||
| Natural variant | 1004 | 1 | R → Q. Corresponds to variant rs16862653 [ dbSNP | Ensembl ]. | VAR_057613 | |||||
| Natural variant | 1009 | 1 | C → S. Ref.11 | VAR_068956 | |||||
| Natural variant | 1178 | 1 | S → N. Corresponds to variant rs35770368 [ dbSNP | Ensembl ]. | VAR_057614 | |||||
| Natural variant | 1914 | 1 | R → H in SOPH. Ref.11 | VAR_068957 | |||||
| Natural variant | 2074 | 1 | A → T. Ref.3 Corresponds to variant rs6710817 [ dbSNP | Ensembl ]. | VAR_057615 | |||||
Experimental info | |||||||||
| Sequence conflict | 22 | 1 | I → T in AAM93544. Ref.1 | ||||||
| Sequence conflict | 533 | 1 | K → E in AAM93544. Ref.1 | ||||||
| Sequence conflict | 745 | 1 | F → L in AAM93544. Ref.1 | ||||||
| Sequence conflict | 1102 | 1 | M → T in AAM93544. Ref.1 | ||||||
| Sequence conflict | 1229 | 1 | K → E in AAD18133. Ref.4 | ||||||
| Sequence conflict | 1277 | 1 | E → G in AAM93544. Ref.1 | ||||||
| Sequence conflict | 1784 | 1 | H → Y in AAM93544. Ref.1 | ||||||
| Sequence conflict | 1797 | 1 | G → S in AAM93544. Ref.1 | ||||||
| Sequence conflict | 1854 | 1 | L → S in AAM93544. Ref.1 | ||||||
| Sequence conflict | 1997 | 1 | E → D in AAD18133. Ref.4 | ||||||
| Sequence conflict | 2028 | 1 | P → L in AAD18133. Ref.4 | ||||||
| Sequence conflict | 2030 | 1 | D → N in AAD18133. Ref.4 | ||||||
| Sequence conflict | 2033 | 1 | P → T in AAD18133. Ref.4 | ||||||
| Sequence conflict | 2171 | 1 | A → T in AAD18133. Ref.4 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "The neuroblastoma amplified gene, NAG: genomic structure and characterisation of the 7.3 kb transcript predominantly expressed in neuroblastoma." Scott D.K., Board J.R., Lu X., Pearson A.D.J., Kenyon R.M., Lunec J. Gene 307:1-11(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), VARIANT ARG-655, TISSUE SPECIFICITY. Tissue: Neuroblastoma. |
| [2] | "Generation and annotation of the DNA sequences of human chromosomes 2 and 4." Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L., Du H. Wilson R.K.Nature 434:724-731(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], VARIANTS VAL-243 AND ARG-655. |
| [3] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 834-2371 (ISOFORM 2), VARIANT THR-2074. Tissue: Eye and PNS. |
| [4] | "Co-amplification of a novel gene, NAG, with the N-myc gene in neuroblastoma." Wimmer K., Zhu X.X., Lamb B.J., Kuick R., Ambros P.F., Kovar H., Thoraval D., Motyka S., Alberts J.R., Hanash S.M. Oncogene 18:233-238(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 993-2371 (ISOFORMS 1/2), TISSUE SPECIFICITY. |
| [5] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1068-2371 (ISOFORMS 1/2). Tissue: Uterus. |
| [6] | "Gene amplification in PNETs/medulloblastomas: mapping of a novel amplified gene within the MYCN amplicon." Fruehwald M.C., O'Dorisio M.S., Rush L.J., Reiter J.L., Smiraglia D.J., Wenger G., Costello J.F., White P.S., Krahe R., Brodeur G.M., Plass C. J. Med. Genet. 37:501-509(2000) [PubMed] [Europe PMC] [Abstract] Cited for: TISSUE SPECIFICITY. |
| [7] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-473 AND SER-475, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [8] | "Large-scale phosphoproteome analysis of human liver tissue by enrichment and fractionation of phosphopeptides with strong anion exchange chromatography." Han G., Ye M., Zhou H., Jiang X., Feng S., Jiang X., Tian R., Wan D., Zou H., Gu J. Proteomics 8:1346-1361(2008) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Liver. |
| [9] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-473 AND SER-475, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [10] | "Lysine acetylation targets protein complexes and co-regulates major cellular functions." Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T.C., Olsen J.V., Mann M. Science 325:834-840(2009) [PubMed] [Europe PMC] [Abstract] Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-1057, MASS SPECTROMETRY. |
| [11] | "Neuroblastoma amplified sequence gene is associated with a novel short stature syndrome characterised by optic nerve atrophy and Pelger-Huet anomaly." Maksimova N., Hara K., Nikolaeva I., Chun-Feng T., Usui T., Takagi M., Nishihira Y., Miyashita A., Fujiwara H., Oyama T., Nogovicina A., Sukhomyasova A., Potapova S., Kuwano R., Takahashi H., Nishizawa M., Onodera O. J. Med. Genet. 47:538-548(2010) [PubMed] [Europe PMC] [Abstract] Cited for: SUBCELLULAR LOCATION, TISSUE SPECIFICITY, VARIANT SOPH HIS-1914, VARIANTS GLU-44; LEU-949 AND SER-1009. |
| [12] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [13] | "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation." Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B. Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-473 AND SER-475, MASS SPECTROMETRY. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AF388385 mRNA. Translation: AAM93544.1. AC007738 Genomic DNA. No translation available. AC074184 Genomic DNA. No translation available. AC008278 Genomic DNA. No translation available. AC008282 Genomic DNA. Translation: AAY24347.1. BC051792 mRNA. Translation: AAH51792.2. BC108693 mRNA. Translation: AAI08694.1. Different termination. BC131735 mRNA. Translation: AAI31736.1. AF056195 mRNA. Translation: AAD18133.1. Sequence problems. AL050281 mRNA. Translation: CAB43382.1. Different initiation. |
| IPI | IPI00333913. IPI00847551. |
| PIR | T13150. |
| RefSeq | NP_056993.2. NM_015909.3. |
| UniGene | Hs.467759. |
3D structure databases | |
| ProteinModelPortal | A2RRP1. |
| ModBase | Search... |
Protein-protein interaction databases | |
| DIP | DIP-56726N. |
| IntAct | A2RRP1. 3 interactions. |
| MINT | MINT-4838513. |
| STRING | 9606.ENSP00000281513. |
PTM databases | |
| PhosphoSite | A2RRP1. |
Proteomic databases | |
| PaxDb | A2RRP1. |
| PeptideAtlas | A2RRP1. |
| PRIDE | A2RRP1. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000281513; ENSP00000281513; ENSG00000151779. ENST00000441750; ENSP00000413201; ENSG00000151779. |
| GeneID | 51594. |
| KEGG | hsa:51594. |
| UCSC | uc002rcc.1. human. uc010exl.1. human. |
Organism-specific databases | |
| CTD | 51594. |
| GeneCards | GC02M015224. |
| H-InvDB | HIX0001840. |
| HGNC | HGNC:15625. NBAS. |
| HPA | HPA036817. |
| MIM | 608025. gene. 614800. phenotype. |
| neXtProt | NX_A2RRP1. |
| PharmGKB | PA164723457. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG293605. |
| HOGENOM | HOG000113737. |
| InParanoid | A2RRP1. |
| OMA | IDVNWWA. |
| OrthoDB | EOG42NHZF. |
| PhylomeDB | A2RRP1. |
Gene expression databases | |
| ArrayExpress | A2RRP1. |
| Bgee | A2RRP1. |
| Genevestigator | A2RRP1. |
Family and domain databases | |
| Gene3D | 2.130.10.10. 3 hits. |
| InterPro | IPR011044. Quino_amine_DH_bsu. IPR013244. Sec39. IPR015943. WD40/YVTN_repeat-like_dom. [Graphical view] |
| Pfam | PF08314. Sec39. 1 hit. [Graphical view] |
| SUPFAM | SSF50969. Amine_DH_B_like. 1 hit. |
| PROSITE | PS00678. WD_REPEATS_1. False negative. PS50082. WD_REPEATS_2. False negative. PS50294. WD_REPEATS_REGION. False negative. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | NBAS. human. |
| GenomeRNAi | 51594. |
| NextBio | 55444. |
| SOURCE | Search... |
Entry information
| Entry name | NBAS_HUMAN | ||||||||
| Accession | Primary (citable) accession number: A2RRP1 Secondary accession number(s): O95790 Q9Y3W5 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 2 Human chromosome 2: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
