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Protein
Submitted name:

Parallel beta-helix repeat protein

Gene

Tsac_0939

Organism
Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciTSAC1094508:GLMA-950-MONOMER.
BRENDAi3.2.1.37. 6289.

Names & Taxonomyi

Protein namesi
Submitted name:
Parallel beta-helix repeat proteinImported
Submitted name:
XylosidaseImported
Gene namesi
Ordered Locus Names:Tsac_0939Imported
OrganismiThermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485)Imported
Taxonomic identifieri1094508 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaThermoanaerobacteralesThermoanaerobacterales Family III. Incertae SedisThermoanaerobacterium
ProteomesiUP000006178 Componenti: Chromosome

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3VSTX-ray1.75A/B/C/D1-638[»]
3VSUX-ray2.05A/B/C/D1-638[»]
3VSVX-ray1.48A/B/C/D1-638[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

OMAiHDAKCSA.

Family and domain databases

Gene3Di2.160.20.10. 3 hits.
InterProiIPR006626. PbH1.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]
SMARTiSM00710. PbH1. 5 hits.
[Graphical view]
SUPFAMiSSF51126. SSF51126. 2 hits.

Sequencei

Sequence statusi: Complete.

A2ICH1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEYHVAKTGS DEGKGTLKDP FLTINKAASV AMAGDTIIVH EGVYREWVKP
60 70 80 90 100
KYKGLSDKRR ITYKAAEGEK VVIKGSERIQ SWQRVEGNVW RCQLPNSFFG
110 120 130 140 150
EFNPYKEEVF GDWLLTVNEK KHLGDVYLNG MSFYEVTNYE DLFNPQLRTE
160 170 180 190 200
VLDHWTQKIV PIKNAEQTKY VWYAEVDREK TTIYANFQGA DPNEEFVEIN
210 220 230 240 250
VRRSCFYPVE TGIDYITVKG FEMAHAATPW APPTADQPGL IGPNWSKGWI
260 270 280 290 300
IEDNIIHDAK CSAISIGKEA TTGNNYRSIR KDKPGYQYQL EAVFNAKRNG
310 320 330 340 350
WSKEKIGSHI IRNNTIYDCG QNAIVGHLGG VFSEIYNNHI YNIALKREFY
360 370 380 390 400
GHEIAGIKLH AAIDVQIHHN RIHDCSLGLW LDWEAQGTRV SKNLFYNNNR
410 420 430 440 450
DVFVEVSHGP YLVDHNILSS EYAIDNMSQG GAYINNLIAG KMNQRKVLNR
460 470 480 490 500
STQYHLPHST EVAGFAFVYG GDDRFYNNIF IGKEGLENVG TSHYNNCTTS
510 520 530 540 550
LEEYIEKVNE VPGDLGEFER VEQPVYINKN AYFNGAEPFE KEKDNLVKKD
560 570 580 590 600
FDPKLAIIDE GDEVYLSLQL PDEFENIVGD IHSTKTLERV RIVDAEYESP
610 620 630
DGKELVLDTD YLDAKKPENS SIGPIALLKK GNNYIKVW
Length:638
Mass (Da):72,755
Last modified:February 20, 2007 - v1
Checksum:i6C0A94703E599F8C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF193646 Genomic DNA. Translation: ABM68042.1.
CP003184 Genomic DNA. Translation: AFK85955.1.
RefSeqiYP_006391554.1. NC_017992.1.

Genome annotation databases

EnsemblBacteriaiAFK85955; AFK85955; Tsac_0939.
GeneIDi13071752.
KEGGitsh:Tsac_0939.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF193646 Genomic DNA. Translation: ABM68042.1.
CP003184 Genomic DNA. Translation: AFK85955.1.
RefSeqiYP_006391554.1. NC_017992.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3VSTX-ray1.75A/B/C/D1-638[»]
3VSUX-ray2.05A/B/C/D1-638[»]
3VSVX-ray1.48A/B/C/D1-638[»]
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFK85955; AFK85955; Tsac_0939.
GeneIDi13071752.
KEGGitsh:Tsac_0939.

Phylogenomic databases

OMAiHDAKCSA.

Enzyme and pathway databases

BioCyciTSAC1094508:GLMA-950-MONOMER.
BRENDAi3.2.1.37. 6289.

Family and domain databases

Gene3Di2.160.20.10. 3 hits.
InterProiIPR006626. PbH1.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]
SMARTiSM00710. PbH1. 5 hits.
[Graphical view]
SUPFAMiSSF51126. SSF51126. 2 hits.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Characterization of a novel beta-xylosidase, XylC, from Thermoanaerobacterium saccharolyticum JW/SL-YS485."
    Shao W., Xue Y., Wu A., Kataeva I., Pei J., Wu H., Wiegel J.
    Appl. Environ. Microbiol. 77:719-726(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: JW/SL-YS485Imported.
  2. "Thermoanaerobacterium saccharolyticum JW/SL-YS485."
    Brown S.D., Land M.L., Herring C.D.
    Submitted (DEC-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 8691 / JW/SL-YS485Imported.
  3. "The substrate/product-binding modes of a novel GH120 beta-xylosidase (XylC) from Thermoanaerobacterium saccharolyticum JW/SL-YS485."
    Huang C.H., Sun Y., Ko T.P., Chen C.C., Zheng Y., Chan H.C., Pang X., Wiegel J., Shao W., Guo R.T.
    Biochem. J. 448:401-407(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.48 ANGSTROMS).
  4. "Profile of Secreted Hydrolases, Associated Proteins, and SlpA in Thermoanaerobacterium saccharolyticum during the Degradation of Hemicellulose."
    Currie D.H., Guss A.M., Herring C.D., Giannone R.J., Johnson C.M., Lankford P.K., Brown S.D., Hettich R.L., Lynd L.R.
    Appl. Environ. Microbiol. 80:5001-5011(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: JW/SL-YS485Imported.

Entry informationi

Entry nameiA2ICH1_THESW
AccessioniPrimary (citable) accession number: A2ICH1
Secondary accession number(s): I3VTW0
Entry historyi
Integrated into UniProtKB/TrEMBL: February 20, 2007
Last sequence update: February 20, 2007
Last modified: April 1, 2015
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.