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Protein

Calcium-binding mitochondrial carrier protein SCaMC-2-B

Gene

slc25a25b

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Calcium-dependent mitochondrial solute carrier.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Calcium bindingi60 – 711PROSITE-ProRule annotationAdd BLAST12

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processTransport
LigandCalcium, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Calcium-binding mitochondrial carrier protein SCaMC-2-B
Alternative name(s):
Small calcium-binding mitochondrial carrier protein 2-B
Solute carrier family 25 member 25-B
Gene namesi
Name:slc25a25b
Synonyms:scamc2b
ORF Names:si:dkey-7o20.1
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 5

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 189Mitochondrial intermembraneSequence analysisAdd BLAST189
Transmembranei190 – 207Helical; Name=1Sequence analysisAdd BLAST18
Topological domaini208 – 244Mitochondrial matrixSequence analysisAdd BLAST37
Transmembranei245 – 264Helical; Name=2Sequence analysisAdd BLAST20
Topological domaini265 – 287Mitochondrial intermembraneSequence analysisAdd BLAST23
Transmembranei288 – 301Helical; Name=3Sequence analysisAdd BLAST14
Topological domaini302 – 337Mitochondrial matrixSequence analysisAdd BLAST36
Transmembranei338 – 357Helical; Name=4Sequence analysisAdd BLAST20
Topological domaini358 – 380Mitochondrial intermembraneSequence analysisAdd BLAST23
Transmembranei381 – 398Helical; Name=5Sequence analysisAdd BLAST18
Topological domaini399 – 437Mitochondrial matrixSequence analysisAdd BLAST39
Transmembranei438 – 457Helical; Name=6Sequence analysisAdd BLAST20
Topological domaini458 – 469Mitochondrial intermembraneSequence analysisAdd BLAST12

GO - Cellular componenti

Keywords - Cellular componenti

Membrane, Mitochondrion, Mitochondrion inner membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003176061 – 469Calcium-binding mitochondrial carrier protein SCaMC-2-BAdd BLAST469

Proteomic databases

PaxDbiA2CEQ0.
PeptideAtlasiA2CEQ0.

Expressioni

Gene expression databases

BgeeiENSDARG00000035468.
ExpressionAtlasiA2CEQ0. baseline.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000088935.

Structurei

3D structure databases

ProteinModelPortaliA2CEQ0.
SMRiA2CEQ0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini47 – 80EF-hand 1PROSITE-ProRule annotationAdd BLAST34
Domaini78 – 113EF-hand 2PROSITE-ProRule annotationAdd BLAST36
Domaini114 – 149EF-hand 3PROSITE-ProRule annotationAdd BLAST36
Repeati184 – 270Solcar 1Add BLAST87
Repeati278 – 363Solcar 2Add BLAST86
Repeati375 – 463Solcar 3Add BLAST89

Sequence similaritiesi

Keywords - Domaini

Repeat, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG0036. Eukaryota.
ENOG410XQ4P. LUCA.
GeneTreeiENSGT00880000137904.
HOGENOMiHOG000165728.
HOVERGENiHBG108464.
InParanoidiA2CEQ0.
KOiK14684.
OMAiFWRHSTM.
PhylomeDBiA2CEQ0.

Family and domain databases

CDDicd00051. EFh. 1 hit.
Gene3Di1.50.40.10. 1 hit.
InterProiView protein in InterPro
IPR011992. EF-hand-dom_pair.
IPR002048. EF_hand_dom.
IPR002167. Graves_DC.
IPR002067. Mit_carrier.
IPR018108. Mitochondrial_sb/sol_carrier.
IPR023395. Mt_carrier_dom.
PfamiView protein in Pfam
PF13499. EF-hand_7. 1 hit.
PF00153. Mito_carr. 3 hits.
PRINTSiPR00928. GRAVESDC.
PR00926. MITOCARRIER.
SUPFAMiSSF103506. SSF103506. 1 hit.
SSF47473. SSF47473. 1 hit.
PROSITEiView protein in PROSITE
PS50222. EF_HAND_2. 3 hits.
PS50920. SOLCAR. 3 hits.

Sequencei

Sequence statusi: Complete.

A2CEQ0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLCLCLYVPV HISERTEFEY FESESLPVQL KSLFKLSLFL PSQEFDSYRK
60 70 80 90 100
WRKKVVKAGD KDLDGQLDFE EFVHYLRDHE KKLRLVFKSL DKKNDGHIDS
110 120 130 140 150
QEIMQSLRDL GVHISEEQAE KILKSMDKNG TMTIDWNEWR DYHLLHPAEN
160 170 180 190 200
IPEIILYWKH STIFDVGESM LVPDEFTAEE KNTGMWWRHL VAGGGAGAVS
210 220 230 240 250
RTCTAPLDRL KVLMQVHATR SNSMGIAGGF TQMIREGGLR SLWRGNGINV
260 270 280 290 300
LKIAPESAIK FMAYEQIKRL IGSNQETLGI LERLVSGSLA GAIAQSSIYP
310 320 330 340 350
MEVLKTRLAL GRTGQYSGIA DCAKHIFKKE GMTAFYKGYI PNMLGIIPYA
360 370 380 390 400
GIDLAVYETL KNSWLQRFAT DSADPGVFVL LACGTMSSTC GQLASYPLAL
410 420 430 440 450
VRTRMQAQAS QEGSPQMTMS GLFRHIVRTE GAIGLYRGLA PNFMKVIPAV
460
SISYVVYENL KITLGVQSR
Length:469
Mass (Da):52,712
Last modified:February 5, 2008 - v2
Checksum:i37BCF177C9BA2B0E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR387979 Genomic DNA. No translation available.
CR749745 Genomic DNA. Translation: CAM16394.1.
RefSeqiNP_001153492.1. NM_001160020.1.
UniGeneiDr.84065.

Genome annotation databases

EnsembliENSDART00000043010; ENSDARP00000043009; ENSDARG00000035468.
GeneIDi569227.
KEGGidre:569227.

Similar proteinsi

Entry informationi

Entry nameiSCM2B_DANRE
AccessioniPrimary (citable) accession number: A2CEQ0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: February 5, 2008
Last modified: June 7, 2017
This is version 73 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families