A2CDX6 (A2CDX6_PROM3) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative type II alternative RNA polymerase sigma factor EMBL ABM79686.1

Gene names

Ordered Locus Names:

P9303_29561

Organism

Prochlorococcus marinus (strain MIT 9303) [Complete proteome] [HAMAP] EMBL ABM79686.1

Taxonomic identifier

59922 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Prochlorophytes › Prochlorococcaceae › Prochlorococcus

Protein attributes

Sequence length	376 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	transcription initiation, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A2CDX6 [UniParc]. Last modified February 20, 2007. Version 1. Checksum: 9C56D59DB58A9377	FASTA	376	43,290
	10 20 30 40 50 60 MKSSPQQTKT SLVRRSGSTD PVRLYLQDIG RVELLTHEEE VTLARLVQRR EALLKQERQL 70 80 90 100 110 120 ASSQEAIKEL QRLEELQQRE ANHSCHWPTK QEWAMAAGLT LAELQDKIET GYKTWGALTG 130 140 150 160 170 180 LDPLELKRSL RAGRRAKDQM IQANLRLVVA VAKKYQQRGI ELLDLVQEGT LGLERAVEKF 190 200 210 220 230 240 DPARGFRFST YAYWWIRQGI TRAIATQSRT IRLPMHITEK LNRIKRVQQE IASNQGRLAS 250 260 270 280 290 300 IADLAKALGL SEETVRLTLM RVPRSISLET RIGQEQDSQL GDLLEDSNAT PEEKLTRDQL 310 320 330 340 350 360 HNDLEILLDE LSNREATVIR RRFGLEDDTP QTLTQIGEAM HLSRERVRQI ESHALLKLRQ 370 PQRRCKVRDY IQNLDS

References

[1]

"Patterns and implications of gene gain and loss in the evolution of Prochlorococcus." Kettler G.C., Martiny A.C., Huang K., Zucker J., Coleman M.L., Rodrigue S., Chen F., Lapidus A., Ferriera S., Johnson J., Steglich C., Church G.M., Richardson P., Chisholm S.W. PLoS Genet. 3:2515-2528(2007) [PubMed: 18159947] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000554 Genomic DNA. Translation: ABM79686.1.
RefSeq	YP_001018951.1. NC_008820.1.
3D structure databases
ProteinModelPortal	A2CDX6.
SMR	A2CDX6. Positions 133-207.
ModBase	Search...
Protein-protein interaction databases
STRING	A2CDX6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4777820.
GenomeReviews	Gene locus P9303_29561 in contig CP000554_GR.
KEGG	pmf:P9303_29561.
PATRIC	23003463. VBIProMar17757_3014.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0568.
HOGENOM	HBG745096.
OMA	MHITEKL.
PhylomeDB	A2CDX6.
ProtClustDB	CLSK826321.
Family and domain databases
InterPro	IPR014284. RNA_pol_sigma-70. IPR000943. RNA_pol_sigma70. IPR009042. RNA_pol_sigma70_r1_2. IPR007627. RNA_pol_sigma70_r2. IPR007624. RNA_pol_sigma70_r3. IPR007630. RNA_pol_sigma70_r4. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR017848. RNA_pol_sigma_RpoD_cyanobac. IPR011991. WHTH_trsnscrt_rep_DNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 2 hits.
KO	K03087.
Pfam	PF00140. Sigma70_r1_2. 1 hit. PF04542. Sigma70_r2. 1 hit. PF04539. Sigma70_r3. 1 hit. PF04545. Sigma70_r4. 1 hit. [Graphical view]
PRINTS	PR00046. SIGMA70FCT.
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMs	TIGR02997. Sig70-cyanoRpoD. 1 hit. TIGR02937. Sigma70-ECF. 1 hit.
PROSITE	PS00715. SIGMA70_1. 1 hit. PS00716. SIGMA70_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A2CDX6_PROM3

Accession

Primary (citable) accession number: A2CDX6

Entry history

Integrated into UniProtKB/TrEMBL:	February 20, 2007
Last sequence update:	February 20, 2007
Last modified:	January 25, 2012
This is version 37 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)