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A2BVP7

- GLGB_PROM5

UniProt

A2BVP7 - GLGB_PROM5

Protein

1,4-alpha-glucan branching enzyme GlgB

Gene

glgB

Organism
Prochlorococcus marinus (strain MIT 9515)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 61 (01 Oct 2014)
      Sequence version 1 (20 Feb 2007)
      Previous versions | rss
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    Functioni

    Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

    Catalytic activityi

    Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei431 – 4311NucleophileUniRule annotation
    Active sitei484 – 4841Proton donorUniRule annotation

    GO - Molecular functioni

    1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
    2. cation binding Source: InterPro
    3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

    GO - Biological processi

    1. glycogen biosynthetic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Glycosyltransferase, Transferase

    Keywords - Biological processi

    Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

    Enzyme and pathway databases

    BioCyciPMAR167542:GI3N-672-MONOMER.
    UniPathwayiUPA00164.

    Protein family/group databases

    CAZyiCBM48. Carbohydrate-Binding Module Family 48.
    GH13. Glycoside Hydrolase Family 13.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    1,4-alpha-glucan branching enzyme GlgBUniRule annotation (EC:2.4.1.18UniRule annotation)
    Alternative name(s):
    1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferaseUniRule annotation
    Alpha-(1->4)-glucan branching enzymeUniRule annotation
    Glycogen branching enzymeUniRule annotation
    Short name:
    BEUniRule annotation
    Gene namesi
    Name:glgBUniRule annotation
    Ordered Locus Names:P9515_06491
    OrganismiProchlorococcus marinus (strain MIT 9515)
    Taxonomic identifieri167542 [NCBI]
    Taxonomic lineageiBacteriaCyanobacteriaProchloralesProchlorococcaceaeProchlorococcus
    ProteomesiUP000001589: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 7547541,4-alpha-glucan branching enzyme GlgBPRO_1000044991Add
    BLAST

    Interactioni

    Subunit structurei

    Monomer.UniRule annotation

    Protein-protein interaction databases

    STRINGi167542.P9515_06491.

    Structurei

    3D structure databases

    ProteinModelPortaliA2BVP7.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0296.
    HOGENOMiHOG000283037.
    KOiK00700.
    OMAiAKLLFMG.
    OrthoDBiEOG6JX7GT.

    Family and domain databases

    Gene3Di2.60.40.10. 2 hits.
    2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    HAMAPiMF_00685. GlgB.
    InterProiIPR006048. A-amylase_b_C.
    IPR006407. GlgB.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR004193. Glyco_hydro_13_N.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR013783. Ig-like_fold.
    IPR014756. Ig_E-set.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    PF02922. CBM_48. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000463. GlgB. 1 hit.
    SUPFAMiSSF51445. SSF51445. 1 hit.
    SSF81296. SSF81296. 2 hits.
    TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A2BVP7-1 [UniParc]FASTAAdd to Basket

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    MKETIQTDWI KSEAFNLENC CNDNPLNILG PHFFKGKWVT RVWMPEADEV    50
    NITFKDKTYK TTTPNHKWMF EAILHEDPKN NYQINVLRGG VSHSQQDPWA 100
    FKDEWMGEVD RHLFAEGNHH HIWKKMGAHI SEDINQKGVM FCIWAPNAKS 150
    ISIIGDINSW DGRHHPMQKR LGGVWELFMP ILKEGDVYKY EIRTQQGHIY 200
    EKADPYGFLH EVRPQNGSII SKLNNFNWED SSWITSRDSS SQINKPISVY 250
    EMHLGSWMHD STDNKYIEKN GNPRHPVPAA DLKPGTRFLT YPELTEKLIP 300
    YVKERGFTHI ELMPISEHPF DGSWGYQVTG WYAPTSRYGT PNEFKEFINK 350
    CHAEGIGVIL DWVPGHFPKD KHGLAFFDGC HLYEHGDPRI GEHKEWGTLI 400
    FNYSRNEVRN FLVANLIYWF EEFHIDGIRV DAVASMLYRD YLRPEGEWIP 450
    NENGGNENLE AVKFLQQANH VLFQHFPGAL SIAEESTTWP MVTEPTNVGG 500
    LGFNLKWNMG WMHDMLDYFE IDPWFRQFHQ NSVTFSITYN YTENFMLALS 550
    HDEVVHGKSH LLHKMPGDDW KKFANTRALL TYMWTHPGKK TIFMGMEFGQ 600
    RQEWNVWDDL QWELLEYEPH KGIRNLIDDL NKLYKNEPSL WKNDFDPYGF 650
    QWIDCDDTSN SVISFMRREN ESNEWLVVIA NFTPNFHESY KIGVPLEGYY 700
    KEIFNSDGSK YGGSNKGNMG GKDTLKYNIH NYENALEIAL PPLSVSIFKH 750
    QLKK 754
    Length:754
    Mass (Da):88,200
    Last modified:February 20, 2007 - v1
    Checksum:i32ACD0F334692C38
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000552 Genomic DNA. Translation: ABM71858.1.
    RefSeqiWP_011819963.1. NC_008817.1.
    YP_001010965.1. NC_008817.1.

    Genome annotation databases

    EnsemblBacteriaiABM71858; ABM71858; P9515_06491.
    GeneIDi4719658.
    KEGGipmc:P9515_06491.
    PATRICi23014880. VBIProMar113831_0668.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000552 Genomic DNA. Translation: ABM71858.1 .
    RefSeqi WP_011819963.1. NC_008817.1.
    YP_001010965.1. NC_008817.1.

    3D structure databases

    ProteinModelPortali A2BVP7.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 167542.P9515_06491.

    Protein family/group databases

    CAZyi CBM48. Carbohydrate-Binding Module Family 48.
    GH13. Glycoside Hydrolase Family 13.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABM71858 ; ABM71858 ; P9515_06491 .
    GeneIDi 4719658.
    KEGGi pmc:P9515_06491.
    PATRICi 23014880. VBIProMar113831_0668.

    Phylogenomic databases

    eggNOGi COG0296.
    HOGENOMi HOG000283037.
    KOi K00700.
    OMAi AKLLFMG.
    OrthoDBi EOG6JX7GT.

    Enzyme and pathway databases

    UniPathwayi UPA00164 .
    BioCyci PMAR167542:GI3N-672-MONOMER.

    Family and domain databases

    Gene3Di 2.60.40.10. 2 hits.
    2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    HAMAPi MF_00685. GlgB.
    InterProi IPR006048. A-amylase_b_C.
    IPR006407. GlgB.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR004193. Glyco_hydro_13_N.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR013783. Ig-like_fold.
    IPR014756. Ig_E-set.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    PF02922. CBM_48. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000463. GlgB. 1 hit.
    SUPFAMi SSF51445. SSF51445. 1 hit.
    SSF81296. SSF81296. 2 hits.
    TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: MIT 9515.

    Entry informationi

    Entry nameiGLGB_PROM5
    AccessioniPrimary (citable) accession number: A2BVP7
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 15, 2008
    Last sequence update: February 20, 2007
    Last modified: October 1, 2014
    This is version 61 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    2. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3