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Protein

30S ribosomal protein S4e

Gene

rps4e

Organism
Hyperthermus butylicus (strain DSM 5456 / JCM 9403 / PLM1-5)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciHBUT415426:GC56-1312-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S4eUniRule annotation
Gene namesi
Name:rps4eUniRule annotation
Ordered Locus Names:Hbut_1312
OrganismiHyperthermus butylicus (strain DSM 5456 / JCM 9403 / PLM1-5)
Taxonomic identifieri415426 [NCBI]
Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiDesulfurococcalesPyrodictiaceaeHyperthermus
Proteomesi
  • UP000002593 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10000813341 – 25530S ribosomal protein S4eAdd BLAST255

Interactioni

Protein-protein interaction databases

STRINGi415426.Hbut_1312.

Structurei

3D structure databases

SMRiA2BMD1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini43 – 115S4 RNA-bindingUniRule annotationAdd BLAST73

Sequence similaritiesi

Belongs to the eukaryotic ribosomal protein eS4 family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04093. Archaea.
COG1471. LUCA.
HOGENOMiHOG000231324.
KOiK02987.
OMAiHIQLNLH.
OrthoDBiPOG093Z0C23.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
HAMAPiMF_00485. Ribosomal_S4e. 1 hit.
InterProiView protein in InterPro
IPR000876. Ribosomal_S4e.
IPR013845. Ribosomal_S4e_central_region.
IPR013843. Ribosomal_S4e_N.
IPR002942. S4_RNA-bd.
PANTHERiPTHR11581. PTHR11581. 1 hit.
PfamiView protein in Pfam
PF00900. Ribosomal_S4e. 1 hit.
PF08071. RS4NT. 1 hit.
PF01479. S4. 1 hit.
PIRSFiPIRSF002116. Ribosomal_S4. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD002667. Ribosomal_S4e_central. 1 hit.
SMARTiView protein in SMART
SM00363. S4. 1 hit.
PROSITEiView protein in PROSITE
PS50889. S4. 1 hit.

Sequencei

Sequence statusi: Complete.

A2BMD1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARMGGRRHL KTLAAPKFWP VRQRAGIFTV KPSPGPHPIE RSIPLLILVR
60 70 80 90 100
DVLGYAKTAR EARKLIAEGH FKIDGRVRRN YKYPVGFMDV IEIVDTGEFY
110 120 130 140 150
RVLPYPTRFF TLHPISKEEA QFKLGRIEDK STVKGGHIQL HLHDGRNVLI
160 170 180 190 200
RVSDPTNPVE AKPYKTLGTV KISIPEQQLL GYAPLEVGSL VIIFGGRNVG
210 220 230 240 250
RVGRIVSIQP GMRRRGIVTI EDARGEKIQT SLEYVFVIAP PNEEPWISLP

EGAWK
Length:255
Mass (Da):28,756
Last modified:February 20, 2007 - v1
Checksum:i22C071317C428AEA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000493 Genomic DNA. Translation: ABM81142.1.
RefSeqiWP_011822460.1. NC_008818.1.

Genome annotation databases

EnsemblBacteriaiABM81142; ABM81142; Hbut_1312.
GeneIDi4782923.
KEGGihbu:Hbut_1312.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000493 Genomic DNA. Translation: ABM81142.1.
RefSeqiWP_011822460.1. NC_008818.1.

3D structure databases

SMRiA2BMD1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi415426.Hbut_1312.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABM81142; ABM81142; Hbut_1312.
GeneIDi4782923.
KEGGihbu:Hbut_1312.

Phylogenomic databases

eggNOGiarCOG04093. Archaea.
COG1471. LUCA.
HOGENOMiHOG000231324.
KOiK02987.
OMAiHIQLNLH.
OrthoDBiPOG093Z0C23.

Enzyme and pathway databases

BioCyciHBUT415426:GC56-1312-MONOMER.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
HAMAPiMF_00485. Ribosomal_S4e. 1 hit.
InterProiView protein in InterPro
IPR000876. Ribosomal_S4e.
IPR013845. Ribosomal_S4e_central_region.
IPR013843. Ribosomal_S4e_N.
IPR002942. S4_RNA-bd.
PANTHERiPTHR11581. PTHR11581. 1 hit.
PfamiView protein in Pfam
PF00900. Ribosomal_S4e. 1 hit.
PF08071. RS4NT. 1 hit.
PF01479. S4. 1 hit.
PIRSFiPIRSF002116. Ribosomal_S4. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD002667. Ribosomal_S4e_central. 1 hit.
SMARTiView protein in SMART
SM00363. S4. 1 hit.
PROSITEiView protein in PROSITE
PS50889. S4. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRS4E_HYPBU
AccessioniPrimary (citable) accession number: A2BMD1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: February 20, 2007
Last modified: April 12, 2017
This is version 63 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.