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A2AWT5

- A2AWT5_MOUSE

UniProt

A2AWT5 - A2AWT5_MOUSE

Protein
Submitted name:

Nucleolar transcription factor 1

Gene

Ubtf

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi
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    • History
      Entry version 63 (01 Oct 2014)
      Sequence version 1 (20 Feb 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. protein binding Source: MGI

    GO - Biological processi

    1. chromatin silencing at rDNA Source: MGI
    2. transcription elongation from RNA polymerase I promoter Source: MGI

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Nucleolar transcription factor 1Imported
    Submitted name:
    Upstream binding transcription factor, RNA polymerase I, isoform CRA_cImported
    Gene namesi
    Name:UbtfImported
    ORF Names:mCG_140722Imported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 11

    Organism-specific databases

    MGIiMGI:98512. Ubtf.

    Subcellular locationi

    GO - Cellular componenti

    1. nucleolus Source: MGI

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00530000063934.
    HOVERGENiHBG008708.
    InParanoidiA2AWT5.
    KOiK09273.
    OMAiCSQRWKL.
    OrthoDBiEOG7P2XTJ.
    TreeFamiTF328989.

    Family and domain databases

    Gene3Di1.10.30.10. 6 hits.
    InterProiIPR029215. HMG_box_5.
    IPR009071. HMG_box_dom.
    [Graphical view]
    PfamiPF00505. HMG_box. 3 hits.
    PF09011. HMG_box_2. 1 hit.
    PF14887. HMG_box_5. 1 hit.
    [Graphical view]
    SMARTiSM00398. HMG. 6 hits.
    [Graphical view]
    SUPFAMiSSF47095. SSF47095. 6 hits.
    PROSITEiPS50118. HMG_BOX_2. 6 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A2AWT5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNGEADCPTD LEMAAPKGQD RWSQEDMLTL LECMKNNLPS NDSSKFKTTE    50
    SHMDWEKVAF KDFSGDMCKL KWVEISNEVR KFRTLTELIL DAQEHVKNPY 100
    KGKKLKKHPD FPKKPLTPYF RFFMEKRAKY AKLHPEMSNL DLTKILSKKY 150
    KELPEKKKMK YIQDFQREKQ EFERNLARFR EDHPDLIQNA KKSDIPEKPK 200
    TPQQLWYTHE KKVYLKVRPD ATTKEVKDSL GKQWSQLSDK KRLKWIHKAL 250
    EQRKEYEEIM RDYIQKHPEL NISEEGITKS TLTKAERQLK DKFDGRPTKP 300
    PPNSYSLYCA ELMANMKDVP STERMVLCSQ QWKLLSQKEK DAYHKKCDQK 350
    KKDYEVELLR FLESLPEEEQ QRVLGEEKML NINKKQTTSP ASKKPSQEGG 400
    KGGSEKPKRP VSAMFIFSEE KRRQLQEERP ELSESELTRL LARMWNDLSE 450
    KKKAKYKARE AALKAQSERK PGGEREDRGK LPESPKRAEE IWQQSVIGDY 500
    LARFKNDRVK ALKAMEMTWN NMEKKEKLMW IKKAAEDQKR YERELSEMRA 550
    PPAATNSSKK MKFQGEPKKP PMNGYQKFSQ ELLSNGELNH LPLKERMVEI 600
    GSRWQRISQS QKEHYKKLAE EQQRQYKVHL DLWVKSLSPQ DRAAYKEYIS 650
    NKRKNMTKLR GPNPKSSRTT LQSKSESEED DDEEEEDDEE EEEEEDDENG 700
    DSSEDGGDSS ESSSEDESED GDENDDDDDD EDDEDDDDED EDNESEGSSS 750
    SSSSSGDSSD SDSN 764
    Length:764
    Mass (Da):89,479
    Last modified:February 20, 2007 - v1
    Checksum:i788C8822CFEE5070
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL954730 Genomic DNA. No translation available.
    CH466558 Genomic DNA. Translation: EDL34113.1.
    RefSeqiNP_035681.2. NM_011551.5.
    UniGeneiMm.2845.

    Genome annotation databases

    EnsembliENSMUST00000079589; ENSMUSP00000078539; ENSMUSG00000020923.
    ENSMUST00000107123; ENSMUSP00000102740; ENSMUSG00000020923.
    ENSMUST00000173870; ENSMUSP00000133611; ENSMUSG00000020923.
    ENSMUST00000174302; ENSMUSP00000133844; ENSMUSG00000020923.
    GeneIDi21429.
    KEGGimmu:21429.
    UCSCiuc007lri.1. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL954730 Genomic DNA. No translation available.
    CH466558 Genomic DNA. Translation: EDL34113.1 .
    RefSeqi NP_035681.2. NM_011551.5.
    UniGenei Mm.2845.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000079589 ; ENSMUSP00000078539 ; ENSMUSG00000020923 .
    ENSMUST00000107123 ; ENSMUSP00000102740 ; ENSMUSG00000020923 .
    ENSMUST00000173870 ; ENSMUSP00000133611 ; ENSMUSG00000020923 .
    ENSMUST00000174302 ; ENSMUSP00000133844 ; ENSMUSG00000020923 .
    GeneIDi 21429.
    KEGGi mmu:21429.
    UCSCi uc007lri.1. mouse.

    Organism-specific databases

    CTDi 7343.
    MGIi MGI:98512. Ubtf.

    Phylogenomic databases

    GeneTreei ENSGT00530000063934.
    HOVERGENi HBG008708.
    InParanoidi A2AWT5.
    KOi K09273.
    OMAi CSQRWKL.
    OrthoDBi EOG7P2XTJ.
    TreeFami TF328989.

    Miscellaneous databases

    NextBioi 300762.
    SOURCEi Search...

    Family and domain databases

    Gene3Di 1.10.30.10. 6 hits.
    InterProi IPR029215. HMG_box_5.
    IPR009071. HMG_box_dom.
    [Graphical view ]
    Pfami PF00505. HMG_box. 3 hits.
    PF09011. HMG_box_2. 1 hit.
    PF14887. HMG_box_5. 1 hit.
    [Graphical view ]
    SMARTi SM00398. HMG. 6 hits.
    [Graphical view ]
    SUPFAMi SSF47095. SSF47095. 6 hits.
    PROSITEi PS50118. HMG_BOX_2. 6 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome."
      Mural R.J., Adams M.D., Myers E.W., Smith H.O., Miklos G.L., Wides R., Halpern A., Li P.W., Sutton G.G., Nadeau J., Salzberg S.L., Holt R.A., Kodira C.D., Lu F., Chen L., Deng Z., Evangelista C.C., Gan W.
      , Heiman T.J., Li J., Li Z., Merkulov G.V., Milshina N.V., Naik A.K., Qi R., Shue B.C., Wang A., Wang J., Wang X., Yan X., Ye J., Yooseph S., Zhao Q., Zheng L., Zhu S.C., Biddick K., Bolanos R., Delcher A.L., Dew I.M., Fasulo D., Flanigan M.J., Huson D.H., Kravitz S.A., Miller J.R., Mobarry C.M., Reinert K., Remington K.A., Zhang Q., Zheng X.H., Nusskern D.R., Lai Z., Lei Y., Zhong W., Yao A., Guan P., Ji R.R., Gu Z., Wang Z.Y., Zhong F., Xiao C., Chiang C.C., Yandell M., Wortman J.R., Amanatides P.G., Hladun S.L., Pratts E.C., Johnson J.E., Dodson K.L., Woodford K.J., Evans C.A., Gropman B., Rusch D.B., Venter E., Wang M., Smith T.J., Houck J.T., Tompkins D.E., Haynes C., Jacob D., Chin S.H., Allen D.R., Dahlke C.E., Sanders R., Li K., Liu X., Levitsky A.A., Majoros W.H., Chen Q., Xia A.C., Lopez J.R., Donnelly M.T., Newman M.H., Glodek A., Kraft C.L., Nodell M., Ali F., An H.J., Baldwin-Pitts D., Beeson K.Y., Cai S., Carnes M., Carver A., Caulk P.M., Center A., Chen Y.H., Cheng M.L., Coyne M.D., Crowder M., Danaher S., Davenport L.B., Desilets R., Dietz S.M., Doup L., Dullaghan P., Ferriera S., Fosler C.R., Gire H.C., Gluecksmann A., Gocayne J.D., Gray J., Hart B., Haynes J., Hoover J., Howland T., Ibegwam C., Jalali M., Johns D., Kline L., Ma D.S., MacCawley S., Magoon A., Mann F., May D., McIntosh T.C., Mehta S., Moy L., Moy M.C., Murphy B.J., Murphy S.D., Nelson K.A., Nuri Z., Parker K.A., Prudhomme A.C., Puri V.N., Qureshi H., Raley J.C., Reardon M.S., Regier M.A., Rogers Y.H., Romblad D.L., Schutz J., Scott J.L., Scott R., Sitter C.D., Smallwood M., Sprague A.C., Stewart E., Strong R.V., Suh E., Sylvester K., Thomas R., Tint N.N., Tsonis C., Wang G., Wang G., Williams M.S., Williams S.M., Windsor S.M., Wolfe K., Wu M.M., Zaveri J., Chaturvedi K., Gabrielian A.E., Ke Z., Sun J., Subramanian G., Venter J.C., Pfannkoch C.M., Barnstead M., Stephenson L.D.
      Science 296:1661-1671(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: MixedImported.
    2. Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
      Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: MixedImported.
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6JImported.
    4. Ensembl
      Submitted (FEB-2012) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: C57BL/6JImported.

    Entry informationi

    Entry nameiA2AWT5_MOUSE
    AccessioniPrimary (citable) accession number: A2AWT5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 20, 2007
    Last sequence update: February 20, 2007
    Last modified: October 1, 2014
    This is version 63 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3