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Protein
Submitted name:

Reticulon-4 receptor-like 2

Gene

Rtn4rl2

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Reticulon-4 receptor-like 2Imported
Gene namesi
Name:Rtn4rl2Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 2

Organism-specific databases

MGIiMGI:2669796. Rtn4rl2.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3636Sequence analysisAdd
BLAST
Chaini37 – 426390Sequence analysisPRO_5002642049Add
BLAST

Proteomic databases

PaxDbiA2ATS6.

Expressioni

Gene expression databases

BgeeiA2ATS6.
ExpressionAtlasiA2ATS6. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000057725.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini267 – 31751LRRCTInterPro annotationAdd
BLAST

Keywords - Domaini

Leucine-rich repeatSAAS annotation, RepeatSAAS annotation, SignalSequence analysis

Phylogenomic databases

eggNOGiKOG0619. Eukaryota.
COG4886. LUCA.
GeneTreeiENSGT00840000129720.
HOGENOMiHOG000116109.
HOVERGENiHBG063707.
OMAiHRCKLAT.
OrthoDBiEOG7CZK5N.
PhylomeDBiA2ATS6.
TreeFamiTF330080.

Family and domain databases

Gene3Di3.80.10.10. 1 hit.
InterProiIPR000483. Cys-rich_flank_reg_C.
IPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
[Graphical view]
PfamiPF13855. LRR_8. 2 hits.
[Graphical view]
SMARTiSM00369. LRR_TYP. 8 hits.
SM00082. LRRCT. 1 hit.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 1 hit.

Sequencei

Sequence statusi: Fragment.

A2ATS6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
PDRRDKMLPG LRRLLQGPAS ACLLLTLLAL PSVTPSCPML CTCYSSPPTV
60 70 80 90 100
SCQANNFSSV PLSLPPSTQR LFLQNNLIRS LRPGTFGPNL LTLWLFSNNL
110 120 130 140 150
STIHPGTFRH LQALEELDLG DNRHLRSLEP DTFQGLERLQ SLHLYRCQLS
160 170 180 190 200
SLPGNIFRGL VSLQYLYLQE NSLLHLQDDL FADLANLSHL FLHGNRLRLL
210 220 230 240 250
TEHVFRGLGS LDRLLLHGNR LQGVHRAAFH GLSRLTILYL FNNSLASLPG
260 270 280 290 300
EALADLPALE FLRLNANPWA CDCRARPLWA WFQRARVSSS DVTCATPPER
310 320 330 340 350
QGRDLRALRD SDFQACPPPT PTRPGSRARG NSSSNHLYGV AEAGAPPADP
360 370 380 390 400
STLYRDLPAE DSRGRQGGDA PTEDDYWGGY GGEDQRGEQT CPGAACQAPA
410 420
DSRGPALSAG LRTPLLCLLP LALHHL
Length:426
Mass (Da):46,843
Last modified:February 20, 2007 - v1
Checksum:iA993E1C379EB5B15
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL928914 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSMUST00000151799; ENSMUSP00000118362; ENSMUSG00000050896.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL928914 Genomic DNA. No translation available.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000057725.

Proteomic databases

PaxDbiA2ATS6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000151799; ENSMUSP00000118362; ENSMUSG00000050896.

Organism-specific databases

MGIiMGI:2669796. Rtn4rl2.

Phylogenomic databases

eggNOGiKOG0619. Eukaryota.
COG4886. LUCA.
GeneTreeiENSGT00840000129720.
HOGENOMiHOG000116109.
HOVERGENiHBG063707.
OMAiHRCKLAT.
OrthoDBiEOG7CZK5N.
PhylomeDBiA2ATS6.
TreeFamiTF330080.

Miscellaneous databases

SOURCEiSearch...

Gene expression databases

BgeeiA2ATS6.
ExpressionAtlasiA2ATS6. baseline and differential.

Family and domain databases

Gene3Di3.80.10.10. 1 hit.
InterProiIPR000483. Cys-rich_flank_reg_C.
IPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
[Graphical view]
PfamiPF13855. LRR_8. 2 hits.
[Graphical view]
SMARTiSM00369. LRR_TYP. 8 hits.
SM00082. LRRCT. 1 hit.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  2. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiA2ATS6_MOUSE
AccessioniPrimary (citable) accession number: A2ATS6
Entry historyi
Integrated into UniProtKB/TrEMBL: February 20, 2007
Last sequence update: February 20, 2007
Last modified: June 8, 2016
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.