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Protein
Submitted name:

Lupus La protein homolog

Gene

Ssb

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Lupus La protein homologImported
Gene namesi
Name:SsbImported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 2

Organism-specific databases

MGIiMGI:98423. Ssb.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

MaxQBiA2AR07.
PaxDbiA2AR07.
PeptideAtlasiA2AR07.
PRIDEiA2AR07.

Expressioni

Gene expression databases

BgeeiENSMUSG00000068882.
ExpressionAtlasiA2AR07. baseline and differential.

Structurei

3D structure databases

SMRiA2AR07.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini7 – 99HTH La-type RNA-bindingInterPro annotationAdd BLAST93
Domaini111 – 184RRMInterPro annotationAdd BLAST74

Phylogenomic databases

eggNOGiENOG410IQXQ. Eukaryota.
COG5193. LUCA.
GeneTreeiENSGT00830000128380.
HOGENOMiHOG000006947.
HOVERGENiHBG059895.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR006630. La_HTH.
IPR002344. Lupus_La.
IPR035979. RBD_domain_sf.
IPR000504. RRM_dom.
IPR036388. WH-like_DNA-bd_sf.
IPR036390. WH_DNA-bd_sf.
PfamiView protein in Pfam
PF05383. La. 1 hit.
PF00076. RRM_1. 1 hit.
PRINTSiPR00302. LUPUSLA.
SMARTiView protein in SMART
SM00715. LA. 1 hit.
SM00360. RRM. 1 hit.
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF54928. SSF54928. 1 hit.
PROSITEiView protein in PROSITE
PS50961. HTH_LA. 1 hit.
PS50102. RRM. 1 hit.

Sequencei

Sequence statusi: Fragment.

A2AR07-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAENGDNEKM TALEAKICHQ IEYYFGDFNL PRDKFLKEQI KLDEGWVPLE
60 70 80 90 100
TMIKFNRLNR LTTDFNVIVQ ALSKSKAKLM EVSADKTKIR RSPSRPLPEV
110 120 130 140 150
TDEYKNDVKN RSVYIKGFPT DATLDDIKEW LDDKGQILNI QMRRTLHKTF
160 170 180
KGSIFAVFDS IQSAKKFVEI PGQKYKDTNL LILF
Length:184
Mass (Da):21,413
Last modified:February 20, 2007 - v1
Checksum:i6291FEEF9719E839
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei184Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL845261 Genomic DNA. No translation available.
AL929249 Genomic DNA. No translation available.
BX322634 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSMUST00000112260; ENSMUSP00000107879; ENSMUSG00000068882.

Similar proteinsi

Entry informationi

Entry nameiA2AR07_MOUSE
AccessioniPrimary (citable) accession number: A2AR07
Entry historyiIntegrated into UniProtKB/TrEMBL: February 20, 2007
Last sequence update: February 20, 2007
Last modified: October 25, 2017
This is version 83 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported