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Protein
Submitted name:

Probable ATP-dependent RNA helicase DDX58

Gene

Ddx58

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Probable ATP-dependent RNA helicase DDX58Imported
Gene namesi
Name:Ddx58Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 4

Organism-specific databases

MGIiMGI:2442858. Ddx58.

PTM / Processingi

Proteomic databases

EPDiA2AP29.
PRIDEiA2AP29.

Expressioni

Gene expression databases

BgeeiA2AP29.
ExpressionAtlasiA2AP29. baseline and differential.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini207 – 386180Helicase ATP-bindingInterPro annotationAdd
BLAST
Domaini566 – 707142Helicase C-terminalInterPro annotationAdd
BLAST

Phylogenomic databases

GeneTreeiENSGT00510000046789.
HOGENOMiHOG000230911.
HOVERGENiHBG052325.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR031964. CARD_dom.
IPR006935. Helicase/UvrB_N.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF16739. CARD_2. 1 hit.
PF00271. Helicase_C. 1 hit.
PF04851. ResIII. 1 hit.
[Graphical view]
SMARTiSM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 3 hits.
PROSITEiPS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

A2AP29-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTAEQRQNLQ AFRDYIKKIL DPTYILSYMS SWLEDGYCGL CEAIESWDFQ
60 70 80 90 100
KIEKLEEHRL LLRRLEPEFK ATVDPNDILS ELSECLINQE CEEIRQIRDT
110 120 130 140 150
KGRMAGAEKM AECLIRSDKE NWPKVLQLAL EKDNSKFSEL WIVDKGFKRA
160 170 180 190 200
ESKADEDDGA EASSIQIFIQ EEPECQNLSQ NPGPPSEASS NNLHSPLKPR
210 220 230 240 250
NYQLELALPA KKGKNTIICA PTGCGKTFVS LLICEHHLKK FPCGQKGKVV
260 270 280 290 300
FFANQIPVYE QQATVFSRYF ERLGYNIASI SGATSDSVSV QHIIEDNDII
310 320 330 340 350
ILTPQILVNN LNNGAIPSLS VFTLMIFDEC HNTSKNHPYN QIMFRYLDHK
360 370 380 390 400
LGESRDPLPQ VVGLTASVGV GDAKTAEEAM QHICKLCAAL DASVIATVRD
410 420 430 440 450
NVAELEQVVY KPQKISRKVA SRTSNTFKCI ISQLMKETEK LAKDVSEELG
460 470 480 490 500
KLFQIQNREF GTQKYEQWIV GVHKACSVFQ MADKEEESRV CKALFLYTSH
510 520 530 540 550
LRKYNDALII SEDAQMTDAL NYLKAFFHDV REAAFDETER ELTRRFEEKL
560 570 580 590 600
EELEKVSRDP SNENPKLRDL YLVLQEEYHL KPETKTILFV KTRALVDALK
610 620 630 640 650
KWIEENPALS FLKPGILTGR GRTNRATGMT LPAQKCVLEA FRASGDNNIL
660 670 680 690 700
IATSVADEGI DIAECNLVIL YEYVGNVIKM IQTRGRGRAR DSKCFLLTSS

ADVIEKE
Length:707
Mass (Da):80,200
Last modified:February 20, 2007 - v1
Checksum:iFE5103B8B9EB4544
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei707 – 7071Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL831793 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSMUST00000142055; ENSMUSP00000115052; ENSMUSG00000040296.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL831793 Genomic DNA. No translation available.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

EPDiA2AP29.
PRIDEiA2AP29.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000142055; ENSMUSP00000115052; ENSMUSG00000040296.

Organism-specific databases

MGIiMGI:2442858. Ddx58.

Phylogenomic databases

GeneTreeiENSGT00510000046789.
HOGENOMiHOG000230911.
HOVERGENiHBG052325.

Miscellaneous databases

ChiTaRSiDdx58. mouse.
SOURCEiSearch...

Gene expression databases

BgeeiA2AP29.
ExpressionAtlasiA2AP29. baseline and differential.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR031964. CARD_dom.
IPR006935. Helicase/UvrB_N.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF16739. CARD_2. 1 hit.
PF00271. Helicase_C. 1 hit.
PF04851. ResIII. 1 hit.
[Graphical view]
SMARTiSM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 3 hits.
PROSITEiPS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  2. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  3. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiA2AP29_MOUSE
AccessioniPrimary (citable) accession number: A2AP29
Entry historyi
Integrated into UniProtKB/TrEMBL: February 20, 2007
Last sequence update: February 20, 2007
Last modified: June 8, 2016
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.