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A2AJK6

- CHD7_MOUSE

UniProt

A2AJK6 - CHD7_MOUSE

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Protein
Chromodomain-helicase-DNA-binding protein 7
Gene
Chd7
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at protein leveli

Functioni

Probable transcription regulator. Maybe involved in the in 45S precursor rRNA production By similarity.

Catalytic activityi

ATP + H2O = ADP + phosphate.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi983 – 9908ATP By similarity

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: UniProtKB-KW
  3. chromatin binding Source: InterPro
  4. helicase activity Source: UniProtKB-KW
  5. protein binding Source: IntAct
Complete GO annotation...

GO - Biological processi

  1. T cell differentiation Source: Ensembl
  2. adult heart development Source: MGI
  3. adult walking behavior Source: MGI
  4. artery morphogenesis Source: MGI
  5. blood circulation Source: MGI
  6. blood vessel development Source: MGI
  7. camera-type eye development Source: MGI
  8. chromatin modification Source: UniProtKB-KW
  9. cognition Source: Ensembl
  10. ear morphogenesis Source: MGI
  11. embryonic hindlimb morphogenesis Source: MGI
  12. epithelium development Source: MGI
  13. face development Source: Ensembl
  14. female genitalia development Source: MGI
  15. heart morphogenesis Source: MGI
  16. in utero embryonic development Source: MGI
  17. inner ear morphogenesis Source: MGI
  18. locomotory behavior Source: MGI
  19. nose development Source: MGI
  20. olfactory behavior Source: MGI
  21. olfactory bulb development Source: MGI
  22. olfactory nerve development Source: MGI
  23. palate development Source: MGI
  24. positive regulation of multicellular organism growth Source: MGI
  25. rRNA processing Source: UniProtKB-KW
  26. regulation of growth hormone secretion Source: Ensembl
  27. regulation of neurogenesis Source: MGI
  28. regulation of transcription, DNA-templated Source: UniProtKB-KW
  29. retina development in camera-type eye Source: Ensembl
  30. semicircular canal morphogenesis Source: MGI
  31. sensory perception of sound Source: MGI
  32. skeletal system development Source: Ensembl
  33. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Chromatin regulator, Helicase, Hydrolase

Keywords - Biological processi

rRNA processing, Transcription, Transcription regulation

Keywords - Ligandi

ATP-binding, DNA-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Chromodomain-helicase-DNA-binding protein 7 (EC:3.6.4.12)
Short name:
CHD-7
Alternative name(s):
ATP-dependent helicase CHD7
Gene namesi
Name:Chd7
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 4

Organism-specific databases

MGIiMGI:2444748. Chd7.

Subcellular locationi

Nucleus By similarity

GO - Cellular componenti

  1. nucleus Source: UniProtKB
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 29862986Chromodomain-helicase-DNA-binding protein 7
PRO_0000289964Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei630 – 6301Phosphoserine By similarity
Modified residuei715 – 7151Phosphoserine By similarity
Modified residuei1567 – 15671Phosphoserine By similarity
Modified residuei1571 – 15711Phosphoserine By similarity
Modified residuei1864 – 18641Phosphoserine By similarity
Modified residuei2220 – 22201Phosphoserine By similarity
Modified residuei2222 – 22221Phosphoserine By similarity
Modified residuei2226 – 22261Phosphoserine By similarity
Modified residuei2240 – 22401Phosphoserine By similarity
Modified residuei2261 – 22611Phosphoserine By similarity
Modified residuei2264 – 22641Phosphoserine By similarity
Modified residuei2345 – 23451Phosphoserine By similarity
Modified residuei2384 – 23841Phosphoserine By similarity
Modified residuei2461 – 24611Phosphothreonine By similarity
Modified residuei2524 – 25241Phosphoserine By similarity
Modified residuei2540 – 25401Phosphothreonine By similarity
Modified residuei2548 – 25481Phosphoserine By similarity
Modified residuei2608 – 26081Phosphoserine By similarity
Modified residuei2945 – 29451Phosphoserine By similarity

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiA2AJK6.
PRIDEiA2AJK6.

PTM databases

PhosphoSiteiA2AJK6.

Expressioni

Tissue specificityi

Expressed in the outflow tract of the heart, optic vesicle, facio-acoustic preganglion complex, brain, olfactory pit, and mandibular component of the first branchial arch.1 Publication

Gene expression databases

ArrayExpressiA2AJK6.
BgeeiA2AJK6.
CleanExiMM_CHD7.
GenevestigatoriA2AJK6.

Interactioni

Subunit structurei

May interact with CTCF. Interacts with CHD8 By similarity.

Binary interactionsi

WithEntry#Exp.IntActNotes
Sox2Q60I236EBI-6122905,EBI-6120118

Protein-protein interaction databases

BioGridi236292. 3 interactions.
IntActiA2AJK6. 14 interactions.
MINTiMINT-4117188.

Structurei

3D structure databases

ProteinModelPortaliA2AJK6.
SMRiA2AJK6. Positions 815-1454, 2552-2611, 2620-2704.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini790 – 85768Chromo 1
Add
BLAST
Domaini872 – 93766Chromo 2
Add
BLAST
Domaini970 – 1144175Helicase ATP-binding
Add
BLAST
Domaini1284 – 1454171Helicase C-terminal
Add
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili2390 – 242031 Reviewed prediction
Add
BLAST

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi1095 – 10984DEAH box

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi115 – 1206Poly-Gly
Compositional biasi150 – 250101Gln-rich
Add
BLAST
Compositional biasi377 – 561185Pro-rich
Add
BLAST
Compositional biasi590 – 708119Lys-rich
Add
BLAST
Compositional biasi1929 – 19357Poly-Arg
Compositional biasi2154 – 224794Glu-rich
Add
BLAST
Compositional biasi2387 – 23948Poly-Arg
Compositional biasi2715 – 272511Poly-Ala
Add
BLAST

Sequence similaritiesi

Contains 2 chromo domains.

Keywords - Domaini

Coiled coil, Repeat

Phylogenomic databases

eggNOGiCOG0553.
GeneTreeiENSGT00560000077077.
HOGENOMiHOG000246942.
HOVERGENiHBG081150.
InParanoidiA2AJK6.
KOiK14437.
OMAiSYKRQQM.
PhylomeDBiA2AJK6.
TreeFamiTF313572.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR006576. BRK_domain.
IPR023780. Chromo_domain.
IPR000953. Chromo_domain/shadow.
IPR016197. Chromodomain-like.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR001005. SANT/Myb.
IPR000330. SNF2_N.
[Graphical view]
PfamiPF07533. BRK. 2 hits.
PF00385. Chromo. 2 hits.
PF00271. Helicase_C. 1 hit.
PF00176. SNF2_N. 1 hit.
[Graphical view]
SMARTiSM00592. BRK. 2 hits.
SM00298. CHROMO. 2 hits.
SM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
SM00717. SANT. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
SSF54160. SSF54160. 2 hits.
PROSITEiPS50013. CHROMO_2. 2 hits.
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
[Graphical view]

Sequences (3)i

Sequence statusi: Complete.

This entry describes 3 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: A2AJK6-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MADPGMMSLF GEDGSLFSEG LEGLGECGYP ENPVNPMGQQ MPIDQGFPSL     50
QPSLHHPSPN QNQTKLTHFD HYSQYEQKMH LMDQPNRMMG SAPGNGLASP 100
HSQYHTPPVP QVPHGGGGGG QMGVYPGIQN ERHGQSFVDG GSMWGPRAVQ 150
VPDQIRAPYQ QQQPQPAPSG PPAQGHPQHM QQMGSYLARG DFSMQQHGQP 200
QQRMGQFSQG QEGLSQGSPF IATSGPGHLS HMPQQSPSMA PSLRHPVQQQ 250
FHHHPAALHG ESVAHSPRFS PNPPQQGAVR PQTLNFSSRN QTVPSPTVNN 300
SGQYSRYPYS NLNQGLVNST GMNQNLGLTN STPMNQSVPR YPNAVGFPSN 350
SGQGLVHQQP IHSSGSLNQM NTQTMHPSQP QGTYASPPPM SPMKAMSNPA 400
GTPPPQVRPG SAGMPMEVGS YPNMPHPQPS HQPPGAMGIG QRNMGPRNMQ 450
QPRSFMGMSS APRELTGHMR PNGCPGVGLA DPQAIQERLI PGQQHPGQQP 500
SFQQLPTCPP LQPHPGLHQS SPPHPHHQPW AQLHPSPQNT PQKVPVHQHS 550
PSEPFLEKPV PDMTQVSAQN AQLVKSDDYL PSIEQQPQQK KKKKKNNHIA 600
AGDSSKGFGK DDFPGGVENQ ELRRNSLDVS QEEKKKKKRP KVKKDPKESK 650
EPKEKKEPKT PKAPKIPKEP KEKKAKTVTP KPKSSKKSSN KKPDSEASAL 700
KKKVNKGKTE GSENSDLDKT PPPSPAPEED EDPGVQKRRS SRQVKRKRYT 750
EDLEFKISDE EADDADAAGR DSPSNTSQSE QQESVDAEGP VVEKIMSSRL 800
VKKQKESGEE VEVEEFYVKY KNFSYLHCQW ASVEDLEKDK RIQQKIKRFK 850
SKQGQSKFLS EIEDDLFNPD YVEVDRIMDF ARSTDDRGEP VIHYLVKWCS 900
LPYEDSTWEL KQDIDQTKIE EFEKLMSREP ETERVERPPA DDWKKSESSR 950
EYKNNNKLRE YQLEGVNWLL FNWYNMRNCI LADEMGLGKT IQSITFLYEI 1000
YLKGIHGPFL VIAPLSTIPN WEREFRTWTE LNVVVYHGSQ ASRRTIQLYE 1050
MYFKDPQGRV IKGSYKFHAI ITTFEMILTD CPELRNIPWR CVVIDEAHRL 1100
KNRNCKLLEG LKMMDLEHKV LLTGTPLQNT VEELFSLLHF LEPSRFPSET 1150
TFMQEFGDLK TEEQVQKLQA ILKPMMLRRL KEDVEKNLAP KEETIIEVEL 1200
TNIQKKYYRA ILEKNFTFLS KGGGQANVPN LLNTMMELRK CCNHPYLING 1250
AEEKILEEFK ETHNAESPDF QLQAMIQAAG KLVLIDKLLP KLKAGGHRVL 1300
IFSQMVRCLD ILEDYLIQRR YPYERIDGRV RGNLRQAAID RFSKPDSDRF 1350
VFLLCTRAGG LGINLTAADT CIIFDSDWNP QNDLQAQARC HRIGQSKSVK 1400
IYRLITRNSY EREMFDKASL KLGLDKAVLQ SMSGRENATN GVQQLSKKEI 1450
EDLLRKGAYG ALMDEEDEGS KFCEEDIDQI LLRRTHTITI ESEGKGSTFA 1500
KASFVASGNR TDISLDDPNF WQKWAKKAEL DIDALNGRNN LVIDTPRVRK 1550
QTRLYSAVKE DELMEFSDLE SDSEEKPCAK PRRPQDKSQG YARSECFRVE 1600
KNLLVYGWGR WTDILSHGRY KRQLTEQDVE TICRAILVYC LNHYRGDENI 1650
KSFIWDLITP TADGQTRALL NHSGLSAPVP RGRKGKKVKA QSTQPVVHDA 1700
HWLASCNPDA LFQEDSYKKH LKHHCNKVLL RVRMLYYLRQ EVIGDQAEKI 1750
LEGADSSEAD VWIPEPFHAE VPTDWWDREA DKSLLIGVFK HGYEKYNSMR 1800
ADPALCFLER VGMPDAKAIA AEQRGTDMLA DGGDGGEFDR EDEDPEYKPT 1850
RAPFKDEIDE FANSPAEDKE ESMEVHSSGK HSESNAELGQ LYWPNTSTLT 1900
TRLRRLITAY QRSYKRQQMR QEALMKTDRR RRRPREEVRA LEAEREAIIS 1950
EKRQKWTRRE EADFYRVVST FGVIFDPVKQ QFDWNQFRAF ARLDKKSDES 2000
LGKYFSCFVA MCRRVCRMPA KPEDEPPDLA SLIEPITEER ASRTLYRIEL 2050
LRKIREQVLH HPQLSDRLKL CQPSLDLPEW WECGRHDRDL LVGAAKHGVS 2100
RTDYHILNDP ELSFLDAHKS FAQNRGASTV PPLNTLAMGF GQTPPVISSA 2150
HVHEEKAMEQ AEGKAEECEH SPAKERSDGK EEEEEAGGAK DGKQECEVEA 2200
SSVKGELKGV EGSADPGSKS VSEKGSEEDE EEKLEDDDKS EESSQPEAGA 2250
VSRGKTFDEE SNASLSTARD ETRDGFYMED GDASVAQLLH ERTFAFSFWP 2300
KDRVMINRLD NICEAVLKGK WPVNRRQMFD FQGLVPGYPP SAVDSPLQKR 2350
SFAELSMVSQ ASISASEDIT TSPQLSKDDA LNLSVPRQRR RRRRKVEIEA 2400
ERAAKRRNLM EMVAQLRESQ VVSENGQEKV VDLSKASREA TSSTSNFSSL 2450
TSKFILPNVS TPVSDAFKSQ MELLQAGLSR TPTRHMLNGS LVDGEPPMKR 2500
RRGRRKNVEG LDLLFMSHKR TPLSAEDAEV TKAFEEDIET PPIRNIPSPG 2550
QLDPDTRIPV INLEDGTRLV GEDAPKNKDL VDWLKLHPTY TVDMPSYVPK 2600
NTDVLFSSFQ KPKQKRHRCR NPNKLDINTL TGEERVPVVN KRNGKKMGGA 2650
MAPPMKDLPR WLEENPEFAV APDWTDIVKQ SGFVPESMFD RLLTGPVVRG 2700
EGASRRGRRP KSEIARAAAA AAAVASTSGI NPLLVNSLFA GMDLTSLQNL 2750
QNLQSLQLAG LMGFPPGLAT AATAGGDAKS PAAVLPLMLP GMAGLPNVFG 2800
LGGLLNNPLS AATGNTTTAS SQGEPEDGTS KAEEKGNDNE DENRDSEKST 2850
DTVSAADSAN GSVGAATAPA ALPSNPLAFN PFLLSTMAPG LFYPSMFLPP 2900
GLGGLTLPGF PALAGLQNAV GTSEEKAADK AEGGPCKDGE TLEGSDAEEN 2950
LDKTVESSIL EDEVAQGEEL DSLEGGDEIE NTGNDE 2986
Length:2,986
Mass (Da):334,061
Last modified:February 20, 2007 - v1
Checksum:i3CDDC3914E6640EB
GO
Isoform 2 (identifier: A2AJK6-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     549-558: HSPSEPFLEK → VRGADACPVA
     559-2986: Missing.

Note: May be due to an intron retention.

Show »
Length:558
Mass (Da):60,067
Checksum:i6F6238F7991C66FD
GO
Isoform 3 (identifier: A2AJK6-3) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     2526-2551: Missing.

Show »
Length:2,960
Mass (Da):331,195
Checksum:i0DE3895F5C467414
GO

Sequence cautioni

The sequence BAE42701.1 differs from that shown. Reason: Frameshift at position 17.
The sequence BAE42701.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei549 – 55810HSPSEPFLEK → VRGADACPVA in isoform 2.
VSP_026040
Alternative sequencei559 – 29862428Missing in isoform 2.
VSP_026041Add
BLAST
Alternative sequencei2526 – 255126Missing in isoform 3.
VSP_026042Add
BLAST

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti102 – 1021S → T in BAE42783. 1 Publication
Sequence conflicti130 – 1301N → D in BAE42783. 1 Publication
Sequence conflicti279 – 2791V → I in BAE42213. 1 Publication
Sequence conflicti2343 – 23431V → M in AAH34239. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK042727 mRNA. Translation: BAC31343.1.
AK171051 mRNA. Translation: BAE42213.1.
AK171857 mRNA. Translation: BAE42701.1. Sequence problems.
AK172025 mRNA. Translation: BAE42783.1.
AL732627, AL805903 Genomic DNA. Translation: CAM16768.1.
AL732627, AL805903 Genomic DNA. Translation: CAM16769.1.
AL805903, AL732627 Genomic DNA. Translation: CAM25203.1.
AL805903, AL732627 Genomic DNA. Translation: CAM25204.1.
BC034239 mRNA. Translation: AAH34239.2.
CCDSiCCDS38689.1. [A2AJK6-1]
RefSeqiNP_001264078.1. NM_001277149.1. [A2AJK6-1]
XP_006538067.1. XM_006538004.1. [A2AJK6-1]
UniGeneiMm.138792.

Genome annotation databases

EnsembliENSMUST00000039267; ENSMUSP00000043903; ENSMUSG00000041235. [A2AJK6-1]
ENSMUST00000051558; ENSMUSP00000059079; ENSMUSG00000041235. [A2AJK6-1]
ENSMUST00000127476; ENSMUSP00000118711; ENSMUSG00000041235.
GeneIDi320790.
KEGGimmu:320790.
UCSCiuc008rxy.1. mouse. [A2AJK6-2]
uc008rya.1. mouse. [A2AJK6-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK042727 mRNA. Translation: BAC31343.1 .
AK171051 mRNA. Translation: BAE42213.1 .
AK171857 mRNA. Translation: BAE42701.1 . Sequence problems.
AK172025 mRNA. Translation: BAE42783.1 .
AL732627 , AL805903 Genomic DNA. Translation: CAM16768.1 .
AL732627 , AL805903 Genomic DNA. Translation: CAM16769.1 .
AL805903 , AL732627 Genomic DNA. Translation: CAM25203.1 .
AL805903 , AL732627 Genomic DNA. Translation: CAM25204.1 .
BC034239 mRNA. Translation: AAH34239.2 .
CCDSi CCDS38689.1. [A2AJK6-1 ]
RefSeqi NP_001264078.1. NM_001277149.1. [A2AJK6-1 ]
XP_006538067.1. XM_006538004.1. [A2AJK6-1 ]
UniGenei Mm.138792.

3D structure databases

ProteinModelPortali A2AJK6.
SMRi A2AJK6. Positions 815-1454, 2552-2611, 2620-2704.
ModBasei Search...

Protein-protein interaction databases

BioGridi 236292. 3 interactions.
IntActi A2AJK6. 14 interactions.
MINTi MINT-4117188.

PTM databases

PhosphoSitei A2AJK6.

Proteomic databases

PaxDbi A2AJK6.
PRIDEi A2AJK6.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000039267 ; ENSMUSP00000043903 ; ENSMUSG00000041235 . [A2AJK6-1 ]
ENSMUST00000051558 ; ENSMUSP00000059079 ; ENSMUSG00000041235 . [A2AJK6-1 ]
ENSMUST00000127476 ; ENSMUSP00000118711 ; ENSMUSG00000041235 .
GeneIDi 320790.
KEGGi mmu:320790.
UCSCi uc008rxy.1. mouse. [A2AJK6-2 ]
uc008rya.1. mouse. [A2AJK6-1 ]

Organism-specific databases

CTDi 55636.
MGIi MGI:2444748. Chd7.

Phylogenomic databases

eggNOGi COG0553.
GeneTreei ENSGT00560000077077.
HOGENOMi HOG000246942.
HOVERGENi HBG081150.
InParanoidi A2AJK6.
KOi K14437.
OMAi SYKRQQM.
PhylomeDBi A2AJK6.
TreeFami TF313572.

Miscellaneous databases

NextBioi 397435.
PROi A2AJK6.
SOURCEi Search...

Gene expression databases

ArrayExpressi A2AJK6.
Bgeei A2AJK6.
CleanExi MM_CHD7.
Genevestigatori A2AJK6.

Family and domain databases

Gene3Di 3.40.50.300. 2 hits.
InterProi IPR006576. BRK_domain.
IPR023780. Chromo_domain.
IPR000953. Chromo_domain/shadow.
IPR016197. Chromodomain-like.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR001005. SANT/Myb.
IPR000330. SNF2_N.
[Graphical view ]
Pfami PF07533. BRK. 2 hits.
PF00385. Chromo. 2 hits.
PF00271. Helicase_C. 1 hit.
PF00176. SNF2_N. 1 hit.
[Graphical view ]
SMARTi SM00592. BRK. 2 hits.
SM00298. CHROMO. 2 hits.
SM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
SM00717. SANT. 1 hit.
[Graphical view ]
SUPFAMi SSF52540. SSF52540. 2 hits.
SSF54160. SSF54160. 2 hits.
PROSITEi PS50013. CHROMO_2. 2 hits.
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-590 (ISOFORM 1).
    Strain: C57BL/6J and NOD.
    Tissue: Cerebellum.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6J.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 2282-2986 (ISOFORM 3).
    Strain: Czech II.
    Tissue: Mammary tumor.
  4. Cited for: TISSUE SPECIFICITY.

Entry informationi

Entry nameiCHD7_MOUSE
AccessioniPrimary (citable) accession number: A2AJK6
Secondary accession number(s): Q3TA86
, Q3TAG7, Q3TBU4, Q8C986, Q8K244
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 29, 2007
Last sequence update: February 20, 2007
Last modified: July 9, 2014
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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